Variant report

Variant	rs17740817
Chromosome Location	chr12:10328849-10328850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10734818	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845052	1.00[ASN][1000 genomes]
rs34300167	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34624528	1.00[EUR][1000 genomes]
rs34733039	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34925630	1.00[ASN][1000 genomes]
rs35311664	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35335503	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35492478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35553961	1.00[EUR][1000 genomes]
rs57056622	1.00[EUR][1000 genomes]
rs6488266	1.00[ASN][1000 genomes]
rs7135302	1.00[ASN][1000 genomes]
rs73258633	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73258637	1.00[ASN][1000 genomes]
rs7964641	1.00[ASN][1000 genomes]
rs9971656	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10321800-10331200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:10325400-10330600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr12:10325400-10330600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr12:10325400-10335000	Weak transcription	A549	lung
5	chr12:10326200-10334800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr12:10327200-10329000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:10327600-10329000	Enhancers	Hela-S3	cervix
8	chr12:10327600-10329600	Enhancers	Fetal Intestine Large	intestine
9	chr12:10327600-10330200	Enhancers	Fetal Intestine Small	intestine
10	chr12:10327800-10330200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr12:10328000-10329200	Enhancers	Colonic Mucosa	Colon
12	chr12:10328400-10329000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr12:10328400-10329200	Enhancers	Small Intestine	intestine
14	chr12:10328400-10329200	Flanking Active TSS	NHEK	skin
15	chr12:10328600-10329000	Flanking Active TSS	HMEC	breast
16	chr12:10328600-10330600	Weak transcription	Placenta	Placenta
17	chr12:10328800-10330000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr12:10328800-10331400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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