Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10734818	1.00[ASN][1000 genomes]
rs10772243	0.98[EUR][1000 genomes]
rs10845052	1.00[ASN][1000 genomes]
rs10845069	0.98[EUR][1000 genomes]
rs10845070	0.98[EUR][1000 genomes]
rs11834419	0.93[EUR][1000 genomes]
rs17740817	1.00[ASN][1000 genomes]
rs34300167	1.00[ASN][1000 genomes]
rs34733039	1.00[ASN][1000 genomes]
rs34925630	1.00[ASN][1000 genomes]
rs35311664	1.00[ASN][1000 genomes]
rs35335503	1.00[ASN][1000 genomes]
rs35492478	1.00[ASN][1000 genomes]
rs4322502	0.96[EUR][1000 genomes]
rs4326886	0.93[EUR][1000 genomes]
rs4764321	0.98[EUR][1000 genomes]
rs6488266	1.00[ASN][1000 genomes]
rs7136468	0.93[EUR][1000 genomes]
rs73258633	1.00[ASN][1000 genomes]
rs73258637	1.00[ASN][1000 genomes]
rs7964641	1.00[ASN][1000 genomes]
rs9971656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10356000-10358000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr12:10357200-10358800	Enhancers	Hela-S3	cervix
3	chr12:10357200-10359200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:10357400-10358200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr12:10357400-10358400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr12:10357400-10358400	Enhancers	HMEC	breast
7	chr12:10357400-10358600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr12:10357400-10358800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr12:10357400-10358800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr12:10357400-10358800	Enhancers	NHEK	skin
11	chr12:10357400-10359000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr12:10357400-10359000	Enhancers	Placenta	Placenta
13	chr12:10357600-10358200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr12:10357600-10358200	Enhancers	A549	lung
15	chr12:10357600-10358600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr12:10357600-10358600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr12:10357600-10358600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr12:10357600-10358800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr12:10357600-10358800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr12:10357800-10358600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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