Variant report

Variant	rs7136468
Chromosome Location	chr12:10366960-10366961
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:10365255..10367563-chr12:11322614..11325373,2	K562	blood:
2	chr12:10363710..10369534-chr12:10376619..10381190,6	K562	blood:
3	chr1:17230831..17231550-chr12:10366679..10367389,2	Hela-S3	cervix:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OLR1-2	chr12:10366760-10366968	ENSG00000255958.1

Variant related genes	Relation type
ENSG00000256537	Chromatin interaction
ENSG00000256712	Chromatin interaction
ENSG00000134539	Chromatin interaction
ENSG00000272426	Chromatin interaction
ENSG00000111215	Chromatin interaction
ENSG00000212127	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10772243	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10845069	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11834419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4322502	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4326886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4764321	0.94[EUR][1000 genomes]
rs6488266	1.00[JPT][hapmap]
rs7135302	0.93[EUR][1000 genomes]
rs9971656	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10364000-10367400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr12:10364200-10367600	Active TSS	HSMMtube	muscle
3	chr12:10364400-10368200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr12:10364600-10367000	Active TSS	Brain Substantia Nigra	brain
5	chr12:10364600-10367000	Active TSS	Stomach Smooth Muscle	stomach
6	chr12:10364600-10367200	Active TSS	Liver	Liver
7	chr12:10364600-10367200	Active TSS	Rectal Smooth Muscle	rectum
8	chr12:10364600-10367400	Active TSS	H9 Cell Line	embryonic stem cell
9	chr12:10364600-10367400	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr12:10364600-10367400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:10364600-10367400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:10364600-10367400	Active TSS	Brain Cingulate Gyrus	brain
13	chr12:10364600-10367400	Active TSS	Thymus	Thymus
14	chr12:10364600-10367600	Active TSS	H1 Cell Line	embryonic stem cell
15	chr12:10364600-10367600	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr12:10364600-10367600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr12:10364600-10367600	Active TSS	Brain Angular Gyrus	brain
18	chr12:10364600-10367600	Active TSS	Fetal Brain Female	brain
19	chr12:10364600-10367600	Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr12:10364600-10367600	Active TSS	K562	blood
21	chr12:10364600-10367600	Active TSS	Osteobl	bone
22	chr12:10364600-10367800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr12:10364600-10367800	Active TSS	Colon Smooth Muscle	Colon
24	chr12:10364600-10368000	Active TSS	HSMM	muscle
25	chr12:10364600-10368200	Active TSS	Colonic Mucosa	Colon
26	chr12:10364600-10368400	Active TSS	Fetal Kidney	kidney
27	chr12:10364600-10368800	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr12:10364800-10367000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr12:10364800-10367000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr12:10364800-10367000	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr12:10364800-10367000	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr12:10364800-10367000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr12:10364800-10367000	Active TSS	Primary T cells from cord blood	blood
34	chr12:10364800-10367000	Active TSS	Brain Hippocampus Middle	brain
35	chr12:10364800-10367000	Active TSS	Fetal Heart	heart
36	chr12:10364800-10367200	Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr12:10364800-10367400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr12:10364800-10367400	Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr12:10364800-10367400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr12:10364800-10367400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr12:10364800-10367400	Active TSS	HUVEC	blood vessel
42	chr12:10364800-10367600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr12:10364800-10367600	Active TSS	Pancreas	Pancrea
44	chr12:10364800-10367800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr12:10364800-10367800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr12:10365000-10367000	Active TSS	NHDF-Ad	bronchial
47	chr12:10365000-10367400	Active TSS	Hela-S3	cervix
48	chr12:10365000-10367600	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr12:10365000-10367600	Active TSS	Ovary	ovary
50	chr12:10365000-10367600	Active TSS	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links