Variant report

Variant	rs35311664
Chromosome Location	chr12:10315915-10315916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10734818	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845052	1.00[ASN][1000 genomes]
rs17740817	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34300167	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34624528	0.93[EUR][1000 genomes]
rs34733039	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34925630	1.00[ASN][1000 genomes]
rs35335503	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35492478	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35553961	0.93[EUR][1000 genomes]
rs57056622	0.93[EUR][1000 genomes]
rs6488266	1.00[ASN][1000 genomes]
rs7135302	1.00[ASN][1000 genomes]
rs73258633	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73258637	1.00[ASN][1000 genomes]
rs7964641	1.00[ASN][1000 genomes]
rs9971656	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv898758	chr12:10309477-10318497	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10307000-10318600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr12:10307000-10319800	Weak transcription	Right Atrium	heart
3	chr12:10311600-10316200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr12:10313200-10317600	Weak transcription	Placenta	Placenta
5	chr12:10313600-10318000	Weak transcription	Hela-S3	cervix
6	chr12:10313800-10316200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr12:10313800-10321800	Weak transcription	NHEK	skin
8	chr12:10314400-10316000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr12:10315000-10319600	Weak transcription	Primary B cells from cord blood	blood
10	chr12:10315800-10316200	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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