Variant report

Variant	rs57056622
Chromosome Location	chr12:10326988-10326989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10734818	0.89[EUR][1000 genomes]
rs17740817	1.00[EUR][1000 genomes]
rs34300167	0.96[EUR][1000 genomes]
rs34624528	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34733039	1.00[EUR][1000 genomes]
rs35311664	0.93[EUR][1000 genomes]
rs35335503	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35492478	1.00[EUR][1000 genomes]
rs35553961	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73258633	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10321800-10331200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:10322000-10327600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:10323000-10327200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:10323400-10327400	Weak transcription	HMEC	breast
5	chr12:10323400-10327400	Weak transcription	NHEK	skin
6	chr12:10325200-10327800	Weak transcription	Placenta	Placenta
7	chr12:10325200-10328400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:10325400-10330600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr12:10325400-10330600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr12:10325400-10335000	Weak transcription	A549	lung
11	chr12:10325600-10327400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:10326200-10334800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr12:10326600-10327600	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links