Variant report

Variant	rs4126646
Chromosome Location	chr6:132010416-132010417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10457574	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10457575	0.82[ASN][1000 genomes]
rs11154642	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12192518	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12193853	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12193980	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12199015	0.81[ASN][1000 genomes]
rs12199875	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12204520	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206403	0.83[ASN][1000 genomes]
rs12206779	0.80[ASN][1000 genomes]
rs12207523	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12207688	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12210900	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17060552	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2270089	0.81[ASN][1000 genomes]
rs2286453	0.90[ASN][1000 genomes]
rs2286454	0.90[ASN][1000 genomes]
rs28671630	0.82[ASN][1000 genomes]
rs3213694	0.98[ASN][1000 genomes]
rs3778569	0.94[ASN][1000 genomes]
rs3778570	0.95[ASN][1000 genomes]
rs3778571	0.96[ASN][1000 genomes]
rs3800193	0.97[ASN][1000 genomes]
rs3800194	0.97[ASN][1000 genomes]
rs3800195	0.97[ASN][1000 genomes]
rs3800198	0.82[ASN][1000 genomes]
rs3800199	0.80[ASN][1000 genomes]
rs3843996	0.80[ASN][1000 genomes]
rs3850247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850249	0.82[ASN][1000 genomes]
rs3861467	0.82[ASN][1000 genomes]
rs3861468	0.83[ASN][1000 genomes]
rs3904056	0.81[ASN][1000 genomes]
rs55931014	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56947999	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60048051	0.90[ASN][1000 genomes]
rs6569753	0.87[ASN][1000 genomes]
rs6901900	0.98[ASN][1000 genomes]
rs6908953	0.82[ASN][1000 genomes]
rs6909448	0.82[ASN][1000 genomes]
rs6922526	0.99[ASN][1000 genomes]
rs6922673	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931997	0.82[ASN][1000 genomes]
rs6935272	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6941622	0.82[ASN][1000 genomes]
rs72999288	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73001214	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73554727	0.82[ASN][1000 genomes]
rs7738667	0.81[ASN][1000 genomes]
rs7745372	0.80[ASN][1000 genomes]
rs7746945	0.83[ASN][1000 genomes]
rs7762879	0.91[ASN][1000 genomes]
rs9321307	0.90[ASN][1000 genomes]
rs9321308	0.93[ASN][1000 genomes]
rs9483311	0.88[ASN][1000 genomes]
rs9483321	0.98[ASN][1000 genomes]
rs9493038	0.86[ASN][1000 genomes]
rs9493042	0.89[ASN][1000 genomes]
rs9493046	0.91[ASN][1000 genomes]
rs9493048	0.90[ASN][1000 genomes]
rs9493050	0.99[ASN][1000 genomes]
rs9493057	0.97[ASN][1000 genomes]
rs9493081	0.82[ASN][1000 genomes]
rs9493082	0.82[ASN][1000 genomes]
rs9493083	0.80[ASN][1000 genomes]
rs9493084	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv886669	chr6:131991532-132059074	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131993600-132020600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:131998600-132054000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:131998800-132043000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:131999200-132017600	Weak transcription	Fetal Intestine Large	intestine
5	chr6:131999400-132020600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:132000000-132014400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:132002600-132054400	Weak transcription	K562	blood
8	chr6:132005400-132011200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:132008200-132013000	Enhancers	Primary B cells from cord blood	blood
10	chr6:132008400-132013600	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:132009600-132011200	Weak transcription	HepG2	liver
12	chr6:132009800-132013200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr6:132009800-132014400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:132009800-132014600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:132009800-132014800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:132010000-132014600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:132010200-132011200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:132010400-132010600	Enhancers	GM12878-XiMat	blood
19	chr6:132010400-132014800	Weak transcription	H9 Cell Line	embryonic stem cell

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