Variant report

Variant	rs9321308
Chromosome Location	chr6:131999720-131999721
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:131989678..131992068-chr6:131997979..131999879,3	MCF-7	breast:
2	chr6:131996501..132001360-chr6:132002218..132005393,5	K562	blood:
3	chr6:131999397..132001377-chr6:132003610..132005547,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10457574	0.98[ASN][1000 genomes]
rs11154642	0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12192518	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs12193853	0.96[ASN][1000 genomes]
rs12193980	0.95[ASN][1000 genomes]
rs12199015	0.90[CHB][hapmap];0.86[CHD][hapmap]
rs12199875	0.90[ASN][1000 genomes]
rs12204520	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs12206403	0.90[CHB][hapmap];0.84[CHD][hapmap]
rs12206779	0.89[CHB][hapmap]
rs12207523	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12207688	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12210900	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12530416	0.90[CHB][hapmap]
rs17060552	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2270089	0.90[CHB][hapmap];0.84[CHD][hapmap]
rs2286453	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286454	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3213693	0.90[CHB][hapmap]
rs3213694	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs365475	0.85[CHB][hapmap]
rs3778569	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3778570	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3778571	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3800193	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3800194	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3800195	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3800198	0.90[CHB][hapmap];0.84[CHD][hapmap]
rs3800199	0.90[CHB][hapmap];0.86[CHD][hapmap]
rs3843996	0.90[CHB][hapmap]
rs3850247	0.93[ASN][1000 genomes]
rs3850249	0.90[CHB][hapmap]
rs3861468	0.90[CHB][hapmap];0.81[CHD][hapmap]
rs3904056	0.90[CHB][hapmap]
rs4126646	0.93[ASN][1000 genomes]
rs55931014	0.93[ASN][1000 genomes]
rs56947999	0.92[ASN][1000 genomes]
rs60048051	0.96[ASN][1000 genomes]
rs6569753	0.90[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6901900	0.93[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6909448	0.90[CHB][hapmap];0.86[CHD][hapmap]
rs6922526	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6922673	0.93[ASN][1000 genomes]
rs6931997	0.90[CHB][hapmap]
rs6935272	0.91[ASN][1000 genomes]
rs72999288	0.96[ASN][1000 genomes]
rs73001214	0.93[ASN][1000 genomes]
rs7738667	0.90[CHB][hapmap]
rs7745372	0.86[CHB][hapmap]
rs7746945	0.90[CHB][hapmap]
rs7762879	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7765347	0.90[CHB][hapmap];0.84[CHD][hapmap]
rs9321307	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9483311	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9483321	0.93[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9483334	0.90[CHB][hapmap];0.84[CHD][hapmap]
rs9483335	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs9493038	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9493042	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9493046	0.97[ASN][1000 genomes]
rs9493048	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9493050	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9493057	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493081	0.90[CHB][hapmap];0.84[CHD][hapmap]
rs9493082	0.95[CHB][hapmap]
rs9493084	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv886669	chr6:131991532-132059074	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131975200-132008200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:131986800-132009600	Strong transcription	HepG2	liver
3	chr6:131993600-132020600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:131995200-132005400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:131996600-132008600	Weak transcription	Liver	Liver
6	chr6:131998600-132054000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:131998800-132000000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:131998800-132001400	Weak transcription	Ovary	ovary
9	chr6:131998800-132043000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:131999200-132000000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:131999200-132000000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:131999200-132000000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:131999200-132017600	Weak transcription	Fetal Intestine Large	intestine
14	chr6:131999400-131999800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:131999400-131999800	Enhancers	H9 Cell Line	embryonic stem cell
16	chr6:131999400-131999800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:131999400-132000000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:131999400-132000000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:131999400-132000000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:131999400-132020600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:131999600-132000000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:131999600-132001400	Weak transcription	K562	blood

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