Variant report

Variant	rs41266753
Chromosome Location	chr6:74513719-74513720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:74482061..74484557-chr6:74512371..74514530,2	MCF-7	breast:
2	chr6:74511500..74515522-chr6:74517572..74520976,4	MCF-7	breast:
3	chr6:74448634..74449301-chr6:74513205..74513867,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12192907	0.81[AMR][1000 genomes]
rs45464791	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs45474895	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55878103	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56201021	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58789425	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72955232	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72957306	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72957333	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72957339	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72957350	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
2	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
3	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
5	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74438400-74527200	Weak transcription	Esophagus	oesophagus
2	chr6:74441400-74544400	Weak transcription	Aorta	Aorta
3	chr6:74477400-74543400	Weak transcription	Lung	lung
4	chr6:74484600-74542000	Weak transcription	Right Ventricle	heart
5	chr6:74490400-74527800	Weak transcription	Thymus	Thymus
6	chr6:74494400-74530800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:74495400-74533200	Weak transcription	Fetal Stomach	stomach
8	chr6:74496800-74528800	Weak transcription	Dnd41	blood
9	chr6:74499000-74527000	Weak transcription	Fetal Thymus	thymus
10	chr6:74499000-74532600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:74499200-74520200	Weak transcription	NHEK	skin
12	chr6:74500600-74525800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:74500600-74527600	Weak transcription	Primary T cells from cord blood	blood
14	chr6:74501200-74514000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:74501200-74521600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:74503200-74520600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr6:74503400-74520400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr6:74503400-74521600	Weak transcription	Left Ventricle	heart
19	chr6:74503400-74530600	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:74503600-74520800	Weak transcription	Adipose Nuclei	Adipose
21	chr6:74503800-74526600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr6:74508600-74514000	Weak transcription	HMEC	breast
23	chr6:74508600-74516400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:74508600-74533000	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:74509000-74516600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:74510200-74514200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:74510600-74514200	Enhancers	Liver	Liver
28	chr6:74510600-74514400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:74510800-74514000	Enhancers	A549	lung
30	chr6:74510800-74514200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:74510800-74514400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:74511000-74527200	Weak transcription	Fetal Lung	lung
33	chr6:74511400-74514400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:74511600-74514400	Enhancers	Osteobl	bone
35	chr6:74511800-74514200	Weak transcription	HepG2	liver
36	chr6:74512000-74514400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr6:74512600-74514000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:74512600-74514200	Enhancers	NH-A	brain
39	chr6:74512600-74514400	Enhancers	Hela-S3	cervix
40	chr6:74512600-74514400	Enhancers	HSMM	muscle
41	chr6:74512600-74514400	Enhancers	HUVEC	blood vessel
42	chr6:74512600-74515400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:74512600-74534400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:74513200-74530000	Weak transcription	HSMMtube	muscle
45	chr6:74513400-74514600	Genic enhancers	NHDF-Ad	bronchial
46	chr6:74513400-74515200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:74513600-74513800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:74513600-74513800	Enhancers	Rectal Smooth Muscle	rectum
49	chr6:74513600-74513800	Flanking Active TSS	NHLF	lung
50	chr6:74513600-74514000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links