Variant report

Variant	rs45464791
Chromosome Location	chr6:74478792-74478793
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12192907	1.00[AFR][1000 genomes]
rs1992140	0.83[AFR][1000 genomes]
rs41266753	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs45474895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55878103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56201021	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58789425	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72955232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72957306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72957333	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72957339	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72957350	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72959395	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
2	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
3	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
5	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv528148	chr6:74468860-74493432	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74425400-74483200	Weak transcription	A549	lung
2	chr6:74438400-74527200	Weak transcription	Esophagus	oesophagus
3	chr6:74441400-74544400	Weak transcription	Aorta	Aorta
4	chr6:74442400-74493400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:74443400-74484000	Weak transcription	Left Ventricle	heart
6	chr6:74444000-74498600	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:74448800-74483400	Weak transcription	NHEK	skin
8	chr6:74453600-74479400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:74456800-74483800	Weak transcription	NHLF	lung
10	chr6:74457200-74484000	Weak transcription	Adipose Nuclei	Adipose
11	chr6:74465200-74484800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:74467400-74486200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:74468000-74492200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:74469800-74483600	Weak transcription	Fetal Lung	lung
15	chr6:74469800-74502800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:74470200-74484000	Weak transcription	Right Ventricle	heart
17	chr6:74471400-74483800	Weak transcription	NH-A	brain
18	chr6:74471800-74486600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:74472000-74482800	Strong transcription	NHDF-Ad	bronchial
20	chr6:74472200-74481800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:74472600-74481800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:74472800-74479800	Strong transcription	HMEC	breast
23	chr6:74473000-74481600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:74473200-74483600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:74474000-74483800	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:74474000-74489400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:74474200-74484000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:74474800-74498200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:74475200-74513600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:74475400-74479400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:74476000-74479400	Weak transcription	Primary T cells from cord blood	blood
32	chr6:74476000-74479400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:74476000-74479600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:74476000-74484000	Weak transcription	HSMM	muscle
35	chr6:74476000-74491200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr6:74476000-74510800	Weak transcription	Fetal Heart	heart
37	chr6:74476200-74479000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:74476200-74483400	Weak transcription	Osteobl	bone
39	chr6:74476400-74483800	Weak transcription	Hela-S3	cervix
40	chr6:74477400-74543400	Weak transcription	Lung	lung
41	chr6:74477600-74479400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:74477600-74480000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:74477800-74480600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:74477800-74481600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:74478200-74479600	Strong transcription	HUVEC	blood vessel
46	chr6:74478200-74480200	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr6:74478400-74481800	Strong transcription	Primary hematopoietic stem cells	blood
48	chr6:74478600-74479400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:74478600-74484000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links