Variant report

Variant	rs72959395
Chromosome Location	chr6:74544571-74544572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12192907	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1992140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45464791	0.83[AFR][1000 genomes]
rs55878103	0.83[AFR][1000 genomes]
rs55904719	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56164706	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56201021	1.00[AFR][1000 genomes]
rs57859755	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72957306	0.83[AFR][1000 genomes]
rs72957333	1.00[AFR][1000 genomes]
rs72957339	1.00[AFR][1000 genomes]
rs72957350	1.00[AFR][1000 genomes]
rs72959386	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72959388	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72961246	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74514400-74545000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:74514400-74546200	Weak transcription	HSMM	muscle
3	chr6:74521800-74545200	Weak transcription	Osteobl	bone
4	chr6:74526400-74565000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:74528600-74557000	Weak transcription	Primary T cells from cord blood	blood
6	chr6:74531200-74553400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:74531400-74545000	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:74532200-74546800	Weak transcription	HUVEC	blood vessel
9	chr6:74533400-74545000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:74534400-74545400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:74534400-74580600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:74538000-74545000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:74539600-74545000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:74540800-74545000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:74541000-74552800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:74542400-74566800	Weak transcription	HMEC	breast
17	chr6:74542800-74545000	Strong transcription	NHDF-Ad	bronchial
18	chr6:74543000-74545000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:74543600-74551400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:74543600-74553600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:74543800-74551400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:74544400-74544600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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