Variant report

Variant	rs72959386
Chromosome Location	chr6:74535163-74535164
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12192907	0.84[AMR][1000 genomes]
rs1992140	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55904719	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56164706	0.89[EUR][1000 genomes]
rs56658263	0.86[AFR][1000 genomes]
rs57859755	0.87[EUR][1000 genomes]
rs58322561	0.86[AFR][1000 genomes]
rs58562849	0.86[AFR][1000 genomes]
rs58958915	0.84[AFR][1000 genomes]
rs59317828	0.86[AFR][1000 genomes]
rs59555720	0.84[AFR][1000 genomes]
rs60004201	0.86[AFR][1000 genomes]
rs60528444	0.86[AFR][1000 genomes]
rs60580295	0.86[AFR][1000 genomes]
rs60905551	0.86[AFR][1000 genomes]
rs61063525	0.86[AFR][1000 genomes]
rs61381210	0.86[AFR][1000 genomes]
rs61692552	0.86[AFR][1000 genomes]
rs61754903	0.86[AFR][1000 genomes]
rs72959388	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72959395	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74441400-74544400	Weak transcription	Aorta	Aorta
2	chr6:74477400-74543400	Weak transcription	Lung	lung
3	chr6:74484600-74542000	Weak transcription	Right Ventricle	heart
4	chr6:74513800-74539600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:74514200-74535400	Weak transcription	NHLF	lung
6	chr6:74514200-74542800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:74514400-74545000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:74514400-74546200	Weak transcription	HSMM	muscle
9	chr6:74521800-74536000	Weak transcription	Left Ventricle	heart
10	chr6:74521800-74541800	Weak transcription	Adipose Nuclei	Adipose
11	chr6:74521800-74545200	Weak transcription	Osteobl	bone
12	chr6:74525200-74535800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:74526000-74535600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:74526400-74542200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:74526400-74565000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:74526600-74535600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:74527800-74541000	Weak transcription	Esophagus	oesophagus
18	chr6:74528600-74557000	Weak transcription	Primary T cells from cord blood	blood
19	chr6:74531000-74541800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:74531200-74536000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:74531200-74544000	Weak transcription	NHEK	skin
22	chr6:74531200-74553400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:74531400-74535800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:74531400-74539600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:74531400-74545000	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:74531600-74541600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:74532200-74546800	Weak transcription	HUVEC	blood vessel
28	chr6:74533400-74535400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:74533400-74545000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:74533600-74540800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:74533800-74535800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:74534400-74536800	Weak transcription	HMEC	breast
33	chr6:74534400-74539600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:74534400-74540000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:74534400-74545400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:74534400-74580600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:74535000-74536600	Weak transcription	NHDF-Ad	bronchial
38	chr6:74535000-74537000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:74535000-74538000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links