The 2.0 version of rSNPBase

Variant report

Variant rs41267566
Chromosome Location chr1:165631287-165631288
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165604800-165632200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:165606200-165659600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:165616400-165632000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
4 chr1:165618000-165638600 Strong transcription Cortex derived primary cultured neurospheres brain
5 chr1:165618200-165652400 Strong transcription Fetal Muscle Leg muscle
6 chr1:165618600-165634800 Strong transcription Monocytes-CD14+_RO01746 blood
7 chr1:165618800-165638600 Strong transcription Fetal Intestine Large intestine
8 chr1:165619000-165635000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr1:165619000-165642600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr1:165619000-165643600 Strong transcription Fetal Muscle Trunk muscle
11 chr1:165619200-165634200 Strong transcription Stomach Smooth Muscle stomach
12 chr1:165619200-165648800 Strong transcription Liver Liver
13 chr1:165619400-165636200 Strong transcription Adipose Nuclei Adipose
14 chr1:165619600-165642600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr1:165619600-165653200 Strong transcription Breast Myoepithelial Primary Cells Breast
16 chr1:165621000-165634400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr1:165621600-165632200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr1:165623400-165653000 Weak transcription Stomach Mucosa stomach
19 chr1:165623800-165631800 Weak transcription HUVEC blood vessel
20 chr1:165623800-165636400 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr1:165624600-165632800 Weak transcription Colonic Mucosa Colon
22 chr1:165625000-165632200 Weak transcription Brain Angular Gyrus brain
23 chr1:165625600-165631800 Weak transcription Fetal Brain Male brain
24 chr1:165627200-165637400 Weak transcription Right Ventricle heart
25 chr1:165627400-165631600 Weak transcription HMEC breast
26 chr1:165627600-165632000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
27 chr1:165627600-165636600 Weak transcription Psoas Muscle Psoas
28 chr1:165628000-165633200 Weak transcription Colon Smooth Muscle Colon
29 chr1:165628000-165634600 Strong transcription Brain Hippocampus Middle brain
30 chr1:165628000-165646600 Strong transcription Primary T cells from cord blood blood
31 chr1:165628600-165634400 Strong transcription Lung lung
32 chr1:165628600-165634400 Strong transcription Skeletal Muscle Female skeletal muscle
33 chr1:165628800-165631600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr1:165628800-165632200 Strong transcription Left Ventricle heart
35 chr1:165628800-165634400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
36 chr1:165628800-165634400 Strong transcription Brain Cingulate Gyrus brain
37 chr1:165628800-165634600 Strong transcription Primary monocytes fromperipheralblood blood
38 chr1:165628800-165639000 Strong transcription Rectal Mucosa Donor 29 rectum
39 chr1:165628800-165639000 Strong transcription Rectal Mucosa Donor 31 rectum
40 chr1:165628800-165640200 Strong transcription Primary neutrophils fromperipheralblood blood
41 chr1:165628800-165642000 Strong transcription HSMM muscle
42 chr1:165628800-165642200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr1:165628800-165644000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:165628800-165646800 Strong transcription Primary T helper cells fromperipheralblood blood
45 chr1:165628800-165646800 Strong transcription Primary T regulatory cells fromperipheralblood blood
46 chr1:165629000-165634800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
47 chr1:165629000-165635400 Strong transcription Primary hematopoietic stem cells short term culture blood
48 chr1:165629000-165638600 Strong transcription Brain Substantia Nigra brain
49 chr1:165629000-165639400 Strong transcription Placenta Placenta
50 chr1:165629000-165653600 Strong transcription Dnd41 blood

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Last update: Aug 31, 2015