Variant report

Variant	rs41277158
Chromosome Location	chr1:213166205-213166206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:213164045..213166844-chr1:213187176..213189622,2	K562	blood:
2	chr1:213164117..213166257-chr1:213181504..213183921,2	K562	blood:

Variant related genes	Relation type
ENSG00000174606	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10157273	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11810428	1.00[EUR][1000 genomes]
rs6540771	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6540772	0.80[EUR][1000 genomes]
rs6540775	0.86[EUR][1000 genomes]
rs6688043	0.80[EUR][1000 genomes]
rs6692011	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6694156	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7516436	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7520067	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7525940	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008594	chr1:213110654-213236750	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213151600-213167800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:213151800-213169400	Weak transcription	Colonic Mucosa	Colon
3	chr1:213153400-213173000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr1:213153800-213168600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:213153800-213170200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:213154200-213167000	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:213154400-213167600	Weak transcription	Adipose Nuclei	Adipose
8	chr1:213154400-213178200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:213154600-213170200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:213154600-213187400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr1:213154800-213167600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr1:213154800-213177400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:213154800-213178200	Weak transcription	Brain Angular Gyrus	brain
14	chr1:213154800-213188000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:213154800-213188400	Weak transcription	Spleen	Spleen
16	chr1:213155000-213168400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr1:213155200-213177800	Weak transcription	Right Ventricle	heart
18	chr1:213155400-213166400	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr1:213155400-213178400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:213155600-213166400	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr1:213155600-213168200	Weak transcription	Thymus	Thymus
22	chr1:213155600-213168800	Weak transcription	Colon Smooth Muscle	Colon
23	chr1:213155600-213169400	Weak transcription	Lung	lung
24	chr1:213155600-213178400	Weak transcription	Gastric	stomach
25	chr1:213155600-213188000	Weak transcription	Aorta	Aorta
26	chr1:213155600-213188000	Weak transcription	Esophagus	oesophagus
27	chr1:213155800-213168400	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr1:213156000-213168800	Weak transcription	Right Atrium	heart
29	chr1:213156000-213176800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:213156000-213177200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr1:213156200-213168200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr1:213156200-213168600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr1:213156200-213187400	Weak transcription	Fetal Brain Male	brain
34	chr1:213156200-213188000	Weak transcription	Pancreas	Pancrea
35	chr1:213156400-213170000	Weak transcription	Brain Anterior Caudate	brain
36	chr1:213156600-213170400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr1:213156600-213176600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr1:213157200-213178400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr1:213158400-213188000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr1:213158800-213169200	Weak transcription	Fetal Stomach	stomach
41	chr1:213160200-213188000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr1:213160400-213167400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr1:213160400-213173000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr1:213160400-213187200	Weak transcription	NHLF	lung
45	chr1:213160600-213169400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr1:213161000-213167000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr1:213161000-213171600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:213161800-213168000	Weak transcription	Hela-S3	cervix
49	chr1:213161800-213169600	Weak transcription	Ovary	ovary
50	chr1:213161800-213170000	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links