The 2.0 version of rSNPBase

Variant report

Variant rs6540772
Chromosome Location chr1:213170484-213170485
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:213153400-213173000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr1:213154400-213178200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr1:213154600-213187400 Weak transcription Rectal Smooth Muscle rectum
4 chr1:213154800-213177400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:213154800-213178200 Weak transcription Brain Angular Gyrus brain
6 chr1:213154800-213188000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:213154800-213188400 Weak transcription Spleen Spleen
8 chr1:213155200-213177800 Weak transcription Right Ventricle heart
9 chr1:213155400-213178400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr1:213155600-213178400 Weak transcription Gastric stomach
11 chr1:213155600-213188000 Weak transcription Aorta Aorta
12 chr1:213155600-213188000 Weak transcription Esophagus oesophagus
13 chr1:213156000-213176800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr1:213156000-213177200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr1:213156200-213187400 Weak transcription Fetal Brain Male brain
16 chr1:213156200-213188000 Weak transcription Pancreas Pancrea
17 chr1:213156600-213176600 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr1:213157200-213178400 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr1:213158400-213188000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr1:213160200-213188000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr1:213160400-213173000 Weak transcription Primary hematopoietic stem cells blood
22 chr1:213160400-213187200 Weak transcription NHLF lung
23 chr1:213161000-213171600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr1:213161800-213171600 Strong transcription Monocytes-CD14+_RO01746 blood
25 chr1:213162000-213184600 Weak transcription Psoas Muscle Psoas
26 chr1:213162200-213188000 Weak transcription Placenta Amnion Placenta Amnion
27 chr1:213162800-213181200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
28 chr1:213162800-213183000 Strong transcription Primary monocytes fromperipheralblood blood
29 chr1:213163200-213187400 Weak transcription Stomach Mucosa stomach
30 chr1:213163400-213173000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
31 chr1:213164200-213172400 Weak transcription Fetal Brain Female brain
32 chr1:213164800-213170600 Strong transcription Fetal Thymus thymus
33 chr1:213164800-213173800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr1:213165000-213171200 Strong transcription Placenta Placenta
35 chr1:213165200-213170800 Strong transcription Primary T regulatory cells fromperipheralblood blood
36 chr1:213165200-213171200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
37 chr1:213165200-213171400 Strong transcription Primary B cells from peripheral blood blood
38 chr1:213165200-213171400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr1:213165400-213170600 Strong transcription Fetal Muscle Leg muscle
40 chr1:213165400-213171200 Strong transcription Primary T cells fromperipheralblood blood
41 chr1:213165400-213174000 Strong transcription Primary T helper cells fromperipheralblood blood
42 chr1:213165400-213174000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr1:213165400-213181600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:213165600-213176000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr1:213166000-213173000 Weak transcription Primary T killer naive cells fromperipheralblood blood
46 chr1:213166000-213176200 Weak transcription Brain Germinal Matrix brain
47 chr1:213166000-213177000 Weak transcription HMEC breast
48 chr1:213166000-213182200 Strong transcription Fetal Intestine Large intestine
49 chr1:213166000-213184200 Weak transcription HepG2 liver
50 chr1:213166800-213170600 Strong transcription K562 blood

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Last update: Aug 31, 2015