The 2.0 version of rSNPBase

Variant report

Variant rs55675185
Chromosome Location chr1:213158745-213158746
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:213133600-213161600 Weak transcription Fetal Intestine Large intestine
2 chr1:213148400-213165400 Weak transcription Fetal Kidney kidney
3 chr1:213150400-213163000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr1:213151600-213167800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
5 chr1:213151800-213169400 Weak transcription Colonic Mucosa Colon
6 chr1:213152600-213161400 Weak transcription Fetal Intestine Small intestine
7 chr1:213152600-213162400 Weak transcription Primary T helper cells fromperipheralblood blood
8 chr1:213153400-213173000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
9 chr1:213153600-213163400 Weak transcription Primary T helper cells PMA-I stimulated --
10 chr1:213153800-213168600 Weak transcription ES-WA7 Cell Line embryonic stem cell
11 chr1:213153800-213170200 Weak transcription Stomach Smooth Muscle stomach
12 chr1:213154000-213164600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr1:213154000-213165000 Weak transcription Brain Substantia Nigra brain
14 chr1:213154200-213167000 Strong transcription HUES48 Cell Line embryonic stem cell
15 chr1:213154400-213161000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:213154400-213167600 Weak transcription Adipose Nuclei Adipose
17 chr1:213154400-213178200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr1:213154600-213170200 Weak transcription Brain Cingulate Gyrus brain
19 chr1:213154600-213187400 Weak transcription Rectal Smooth Muscle rectum
20 chr1:213154800-213167600 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr1:213154800-213177400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr1:213154800-213178200 Weak transcription Brain Angular Gyrus brain
23 chr1:213154800-213188000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr1:213154800-213188400 Weak transcription Spleen Spleen
25 chr1:213155000-213168400 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr1:213155200-213163000 Weak transcription Muscle Satellite Cultured Cells --
27 chr1:213155200-213165200 Weak transcription Primary B cells from peripheral blood blood
28 chr1:213155200-213177800 Weak transcription Right Ventricle heart
29 chr1:213155400-213161400 Weak transcription Primary T cells from cord blood blood
30 chr1:213155400-213163000 Weak transcription Duodenum Mucosa Duodenum
31 chr1:213155400-213163200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
32 chr1:213155400-213165400 Weak transcription Primary T cells fromperipheralblood blood
33 chr1:213155400-213166400 Strong transcription H1 Cell Line embryonic stem cell
34 chr1:213155400-213178400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
35 chr1:213155600-213161200 Weak transcription Breast Myoepithelial Primary Cells Breast
36 chr1:213155600-213162200 Strong transcription H9 Cell Line embryonic stem cell
37 chr1:213155600-213162800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
38 chr1:213155600-213162800 Weak transcription Left Ventricle heart
39 chr1:213155600-213166400 Strong transcription HUES6 Cell Line embryonic stem cell
40 chr1:213155600-213168200 Weak transcription Thymus Thymus
41 chr1:213155600-213168800 Weak transcription Colon Smooth Muscle Colon
42 chr1:213155600-213169400 Weak transcription Lung lung
43 chr1:213155600-213178400 Weak transcription Gastric stomach
44 chr1:213155600-213188000 Weak transcription Aorta Aorta
45 chr1:213155600-213188000 Weak transcription Esophagus oesophagus
46 chr1:213155800-213161800 Weak transcription Brain Inferior Temporal Lobe brain
47 chr1:213155800-213168400 Strong transcription HUES64 Cell Line embryonic stem cell
48 chr1:213156000-213158800 Strong transcription Fetal Stomach stomach
49 chr1:213156000-213159800 Weak transcription Fetal Thymus thymus
50 chr1:213156000-213160400 Strong transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015