The 2.0 version of rSNPBase

Variant report

Variant rs2817982
Chromosome Location chr1:213387946-213387947
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:213326600-213422200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
2 chr1:213340600-213424600 Weak transcription Pancreas Pancrea
3 chr1:213345600-213404600 Weak transcription Osteobl bone
4 chr1:213360400-213405200 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr1:213362200-213415400 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr1:213369600-213388800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr1:213369800-213398200 Weak transcription Fetal Heart heart
8 chr1:213370800-213427600 Weak transcription Rectal Smooth Muscle rectum
9 chr1:213371000-213389400 Weak transcription Right Ventricle heart
10 chr1:213371800-213388800 Weak transcription HepG2 liver
11 chr1:213371800-213390000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr1:213372000-213389800 Weak transcription Brain Hippocampus Middle brain
13 chr1:213372000-213393200 Weak transcription Primary neutrophils fromperipheralblood blood
14 chr1:213372000-213405200 Weak transcription Primary T helper cells PMA-I stimulated --
15 chr1:213372600-213390200 Weak transcription Primary T regulatory cells fromperipheralblood blood
16 chr1:213372600-213413800 Weak transcription Primary T helper naive cells fromperipheralblood blood
17 chr1:213372800-213414000 Weak transcription Primary T helper cells fromperipheralblood blood
18 chr1:213373000-213398000 Weak transcription Colon Smooth Muscle Colon
19 chr1:213373000-213405200 Weak transcription Left Ventricle heart
20 chr1:213373000-213414200 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr1:213373000-213423000 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr1:213373200-213405000 Weak transcription Primary T cells fromperipheralblood blood
23 chr1:213373200-213417000 Weak transcription Primary B cells from peripheral blood blood
24 chr1:213375200-213390400 Weak transcription HSMMtube muscle
25 chr1:213375400-213388600 Weak transcription HMEC breast
26 chr1:213375800-213405200 Weak transcription Psoas Muscle Psoas
27 chr1:213375800-213405200 Weak transcription HSMM muscle
28 chr1:213376400-213390600 Weak transcription Muscle Satellite Cultured Cells --
29 chr1:213376800-213391800 Weak transcription Brain Cingulate Gyrus brain
30 chr1:213376800-213414200 Weak transcription Brain Anterior Caudate brain
31 chr1:213377800-213389800 Weak transcription Brain Angular Gyrus brain
32 chr1:213378800-213388600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr1:213378800-213405200 Weak transcription K562 blood
34 chr1:213378800-213421200 Weak transcription Fetal Kidney kidney
35 chr1:213379000-213405200 Weak transcription Stomach Smooth Muscle stomach
36 chr1:213381600-213425000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
37 chr1:213382600-213405000 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr1:213384400-213388400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
39 chr1:213384600-213388400 Weak transcription Primary T helper naive cells from peripheral blood blood
40 chr1:213384800-213388000 Weak transcription Thymus Thymus
41 chr1:213384800-213388200 Weak transcription Brain Substantia Nigra brain
42 chr1:213385200-213388600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr1:213385200-213389000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr1:213385400-213388400 ZNF genes & repeats ES-I3 Cell Line embryonic stem cell
45 chr1:213385600-213388400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
46 chr1:213385600-213388400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr1:213385600-213388600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr1:213385600-213407000 Weak transcription Stomach Mucosa stomach
49 chr1:213385800-213388400 Strong transcription Adipose Nuclei Adipose
50 chr1:213385800-213388400 Strong transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015