Variant report
| Variant | rs58141535 |
|---|---|
| Chromosome Location | chr1:213481103-213481104 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:213466093..213467963-chr1:213479661..213482315,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11120125 | 1.00[ASN][1000 genomes] |
| rs11801377 | 1.00[ASN][1000 genomes] |
| rs1187790 | 1.00[ASN][1000 genomes] |
| rs1187798 | 1.00[ASN][1000 genomes] |
| rs1187799 | 1.00[ASN][1000 genomes] |
| rs1187800 | 1.00[ASN][1000 genomes] |
| rs12127112 | 1.00[ASN][1000 genomes] |
| rs1369215 | 1.00[ASN][1000 genomes] |
| rs1656004 | 1.00[ASN][1000 genomes] |
| rs17020842 | 1.00[ASN][1000 genomes] |
| rs2359570 | 1.00[ASN][1000 genomes] |
| rs2654912 | 1.00[ASN][1000 genomes] |
| rs2654913 | 1.00[ASN][1000 genomes] |
| rs2817982 | 1.00[ASN][1000 genomes] |
| rs2841421 | 1.00[ASN][1000 genomes] |
| rs2841429 | 1.00[ASN][1000 genomes] |
| rs2841438 | 1.00[ASN][1000 genomes] |
| rs320383 | 1.00[ASN][1000 genomes] |
| rs320429 | 1.00[ASN][1000 genomes] |
| rs35281247 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57318993 | 1.00[ASN][1000 genomes] |
| rs58305443 | 1.00[ASN][1000 genomes] |
| rs58489960 | 1.00[ASN][1000 genomes] |
| rs58860460 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59165361 | 1.00[ASN][1000 genomes] |
| rs59319827 | 1.00[ASN][1000 genomes] |
| rs60414722 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74142114 | 1.00[ASN][1000 genomes] |
| rs74142116 | 1.00[ASN][1000 genomes] |
| rs74142117 | 1.00[ASN][1000 genomes] |
| rs7533253 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3392967 | chr1:213271844-213490132 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:213474800-213487400 | Weak transcription | Right Atrium | heart |
