Variant report
| Variant | rs17020842 |
|---|---|
| Chromosome Location | chr1:213684808-213684809 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:213663600..213666449-chr1:213683082..213685702,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000225233 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11120125 | 1.00[ASN][1000 genomes] |
| rs11801377 | 1.00[ASN][1000 genomes] |
| rs13375957 | 0.81[EUR][1000 genomes] |
| rs17020918 | 1.00[ASN][1000 genomes] |
| rs17020923 | 1.00[ASN][1000 genomes] |
| rs2359570 | 1.00[ASN][1000 genomes] |
| rs320383 | 1.00[ASN][1000 genomes] |
| rs320387 | 0.89[EUR][1000 genomes] |
| rs320420 | 1.00[ASN][1000 genomes] |
| rs320429 | 1.00[ASN][1000 genomes] |
| rs57318993 | 1.00[ASN][1000 genomes] |
| rs57534780 | 1.00[ASN][1000 genomes] |
| rs58047388 | 1.00[ASN][1000 genomes] |
| rs58141535 | 1.00[ASN][1000 genomes] |
| rs58489960 | 1.00[ASN][1000 genomes] |
| rs58860460 | 1.00[ASN][1000 genomes] |
| rs59165361 | 1.00[ASN][1000 genomes] |
| rs59319827 | 1.00[ASN][1000 genomes] |
| rs59349475 | 1.00[ASN][1000 genomes] |
| rs60866557 | 1.00[ASN][1000 genomes] |
| rs6688960 | 1.00[ASN][1000 genomes] |
| rs74142114 | 1.00[ASN][1000 genomes] |
| rs74142116 | 1.00[ASN][1000 genomes] |
| rs74142117 | 1.00[ASN][1000 genomes] |
| rs74142506 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832525 | chr1:213580476-213782815 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:213684600-213685000 | Bivalent Enhancer | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
