Variant report

Variant	rs57534780
Chromosome Location	chr1:213748072-213748073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11120125	1.00[ASN][1000 genomes]
rs11801377	1.00[ASN][1000 genomes]
rs17020842	1.00[ASN][1000 genomes]
rs17020918	1.00[ASN][1000 genomes]
rs17020923	1.00[ASN][1000 genomes]
rs320383	1.00[ASN][1000 genomes]
rs320420	1.00[ASN][1000 genomes]
rs320429	1.00[ASN][1000 genomes]
rs57318993	1.00[ASN][1000 genomes]
rs58047388	1.00[ASN][1000 genomes]
rs59165361	1.00[ASN][1000 genomes]
rs59319827	1.00[ASN][1000 genomes]
rs59349475	1.00[ASN][1000 genomes]
rs60866557	1.00[ASN][1000 genomes]
rs6688960	1.00[ASN][1000 genomes]
rs74142114	1.00[ASN][1000 genomes]
rs74142116	1.00[ASN][1000 genomes]
rs74142117	1.00[ASN][1000 genomes]
rs74142506	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3345878	chr1:213714352-213841547	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426755	chr1:213714443-213841514	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3378592	chr1:213714463-213841484	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213741000-213748200	Enhancers	HepG2	liver
2	chr1:213744600-213748400	Enhancers	Fetal Intestine Large	intestine
3	chr1:213745400-213748200	Enhancers	Fetal Intestine Small	intestine
4	chr1:213747400-213750400	Weak transcription	Small Intestine	intestine
5	chr1:213747400-213758400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr1:213748000-213748200	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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