Variant report
| Variant | rs59319827 |
|---|---|
| Chromosome Location | chr1:213602846-213602847 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:213597571..213599249-chr1:213602725..213604543,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPL31P13 | TF binding region |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs11120125 | 1.00[ASN][1000 genomes] |
| rs11801377 | 1.00[ASN][1000 genomes] |
| rs1187790 | 1.00[ASN][1000 genomes] |
| rs1187798 | 1.00[ASN][1000 genomes] |
| rs1187799 | 1.00[ASN][1000 genomes] |
| rs1187800 | 1.00[ASN][1000 genomes] |
| rs12127112 | 1.00[ASN][1000 genomes] |
| rs1369215 | 1.00[ASN][1000 genomes] |
| rs1656004 | 1.00[ASN][1000 genomes] |
| rs17020842 | 1.00[ASN][1000 genomes] |
| rs17020918 | 1.00[ASN][1000 genomes] |
| rs17020923 | 1.00[ASN][1000 genomes] |
| rs2359570 | 1.00[ASN][1000 genomes] |
| rs2654912 | 1.00[ASN][1000 genomes] |
| rs2654913 | 1.00[ASN][1000 genomes] |
| rs2817982 | 1.00[ASN][1000 genomes] |
| rs2841421 | 1.00[ASN][1000 genomes] |
| rs2841429 | 1.00[ASN][1000 genomes] |
| rs320383 | 1.00[ASN][1000 genomes] |
| rs320420 | 1.00[ASN][1000 genomes] |
| rs320429 | 1.00[ASN][1000 genomes] |
| rs35281247 | 1.00[ASN][1000 genomes] |
| rs57318993 | 1.00[ASN][1000 genomes] |
| rs57534780 | 1.00[ASN][1000 genomes] |
| rs58047388 | 1.00[ASN][1000 genomes] |
| rs58141535 | 1.00[ASN][1000 genomes] |
| rs58305443 | 1.00[ASN][1000 genomes] |
| rs58489960 | 1.00[ASN][1000 genomes] |
| rs58860460 | 1.00[ASN][1000 genomes] |
| rs59165361 | 1.00[ASN][1000 genomes] |
| rs59349475 | 1.00[ASN][1000 genomes] |
| rs60414722 | 1.00[ASN][1000 genomes] |
| rs6688960 | 1.00[ASN][1000 genomes] |
| rs74142114 | 1.00[ASN][1000 genomes] |
| rs74142116 | 1.00[ASN][1000 genomes] |
| rs74142117 | 1.00[ASN][1000 genomes] |
| rs74142506 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832525 | chr1:213580476-213782815 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
