Variant report

Variant	rs9429904
Chromosome Location	chr1:213448261-213448262
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:213445277..213447127-chr1:213447433..213449979,2	K562	blood:
2	chr1:213447316..213454346-chr1:213454663..213460102,7	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11120089	0.89[EUR][1000 genomes]
rs11120094	0.82[ASN][1000 genomes]
rs1187777	0.93[EUR][1000 genomes]
rs1187788	0.96[EUR][1000 genomes]
rs1187802	0.93[EUR][1000 genomes]
rs1187806	0.96[EUR][1000 genomes]
rs12065249	0.89[EUR][1000 genomes]
rs12082134	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1628854	0.93[EUR][1000 genomes]
rs17742003	0.89[EUR][1000 genomes]
rs2654910	0.96[EUR][1000 genomes]
rs2817982	0.90[AFR][1000 genomes]
rs2817985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2841422	0.93[EUR][1000 genomes]
rs2841429	0.85[AFR][1000 genomes]
rs2841433	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41307658	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4655415	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57140665	0.89[EUR][1000 genomes]
rs57376645	0.89[EUR][1000 genomes]
rs57670103	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57845296	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58865439	0.89[EUR][1000 genomes]
rs60194877	0.89[EUR][1000 genomes]
rs60727621	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61832461	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61832463	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61832465	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61832467	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61832468	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61832470	0.90[ASN][1000 genomes]
rs61832474	0.90[ASN][1000 genomes]
rs61832475	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61832476	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61832498	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61832499	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61832501	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61832502	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61832503	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61832508	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61832509	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61832510	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61832511	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61832513	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61832528	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61832529	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61834076	0.89[EUR][1000 genomes]
rs61834080	0.89[EUR][1000 genomes]
rs61834082	0.85[EUR][1000 genomes]
rs61834083	0.89[EUR][1000 genomes]
rs61834084	0.89[EUR][1000 genomes]
rs61834086	0.89[EUR][1000 genomes]
rs61834087	0.82[EUR][1000 genomes]
rs61834088	0.89[EUR][1000 genomes]
rs61834089	0.89[EUR][1000 genomes]
rs61834091	0.89[EUR][1000 genomes]
rs61834093	0.89[EUR][1000 genomes]
rs61834094	0.89[EUR][1000 genomes]
rs61834096	0.89[EUR][1000 genomes]
rs61834099	0.89[EUR][1000 genomes]
rs61834102	0.81[EUR][1000 genomes]
rs61834103	0.89[EUR][1000 genomes]
rs61834104	0.89[EUR][1000 genomes]
rs61834105	0.89[EUR][1000 genomes]
rs61834109	0.89[EUR][1000 genomes]
rs61834110	0.89[EUR][1000 genomes]
rs61834116	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834117	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61834118	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834119	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61834123	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61834126	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61834135	0.90[ASN][1000 genomes]
rs61834136	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834137	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834138	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834139	0.90[ASN][1000 genomes]
rs61834141	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834142	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392967	chr1:213271844-213490132	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213388200-213455400	Weak transcription	Placenta	Placenta
2	chr1:213402800-213454800	Weak transcription	Brain Substantia Nigra	brain
3	chr1:213405600-213454800	Weak transcription	Brain Angular Gyrus	brain
4	chr1:213405800-213457600	Weak transcription	NHLF	lung
5	chr1:213406000-213450000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:213406200-213454800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:213412600-213452400	Weak transcription	Right Ventricle	heart
8	chr1:213415400-213450200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:213415600-213451000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:213415600-213453800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr1:213417200-213453600	Weak transcription	HSMMtube	muscle
12	chr1:213418400-213449200	Weak transcription	Fetal Lung	lung
13	chr1:213427000-213451400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr1:213431200-213450600	Weak transcription	Psoas Muscle	Psoas
15	chr1:213433800-213454800	Weak transcription	Brain Anterior Caudate	brain
16	chr1:213434400-213454800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr1:213434400-213454800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:213434600-213449200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr1:213434600-213453800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr1:213434600-213453800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr1:213435200-213456200	Weak transcription	Esophagus	oesophagus
22	chr1:213438600-213449600	Weak transcription	Gastric	stomach
23	chr1:213440000-213451400	Weak transcription	NH-A	brain
24	chr1:213440000-213469800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:213440400-213450800	Weak transcription	Fetal Stomach	stomach
26	chr1:213440600-213449400	Weak transcription	Ovary	ovary
27	chr1:213440600-213449800	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr1:213440600-213452400	Weak transcription	Aorta	Aorta
29	chr1:213440600-213454200	Weak transcription	Fetal Muscle Leg	muscle
30	chr1:213440600-213454400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:213440600-213454800	Weak transcription	Left Ventricle	heart
32	chr1:213440800-213449200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:213440800-213449800	Weak transcription	GM12878-XiMat	blood
34	chr1:213440800-213450800	Weak transcription	Fetal Intestine Small	intestine
35	chr1:213440800-213451000	Weak transcription	Colon Smooth Muscle	Colon
36	chr1:213440800-213457600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:213440800-213465800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr1:213441000-213454600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr1:213441400-213448400	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr1:213442800-213449000	Weak transcription	Fetal Intestine Large	intestine
41	chr1:213443200-213449000	Weak transcription	Primary B cells from peripheral blood	blood
42	chr1:213443600-213452200	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr1:213443600-213457000	Weak transcription	Lung	lung
44	chr1:213444000-213448600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr1:213444000-213454800	Weak transcription	Fetal Brain Female	brain
46	chr1:213444000-213455000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr1:213444200-213457600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr1:213444400-213449400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr1:213445200-213448400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr1:213445200-213448400	Weak transcription	Dnd41	blood

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