Variant report

Variant	rs61832498
Chromosome Location	chr1:213439784-213439785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs11120089	0.89[EUR][1000 genomes]
rs1187777	0.93[EUR][1000 genomes]
rs1187788	0.96[EUR][1000 genomes]
rs1187802	0.93[EUR][1000 genomes]
rs1187806	0.96[EUR][1000 genomes]
rs12065249	0.89[EUR][1000 genomes]
rs12082134	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1628854	0.93[EUR][1000 genomes]
rs17742003	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2654910	0.96[EUR][1000 genomes]
rs2817985	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2841422	0.93[EUR][1000 genomes]
rs2841433	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41307658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57140665	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs57376645	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs57670103	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57845296	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58865439	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs60194877	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs60727621	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61832460	1.00[AFR][1000 genomes]
rs61832461	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832463	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832465	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832467	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832468	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832470	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61832471	1.00[AFR][1000 genomes]
rs61832474	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61832475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832502	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832503	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832508	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832509	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832510	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832511	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832513	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832528	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832529	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832533	1.00[AFR][1000 genomes]
rs61832534	1.00[AFR][1000 genomes]
rs61834072	1.00[AFR][1000 genomes]
rs61834076	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834077	1.00[AFR][1000 genomes]
rs61834080	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834082	0.85[EUR][1000 genomes]
rs61834083	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834084	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834086	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834087	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61834088	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834089	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834091	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834092	1.00[AFR][1000 genomes]
rs61834093	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834094	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834096	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834099	0.89[EUR][1000 genomes]
rs61834102	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61834103	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834104	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834105	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834109	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834110	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834111	1.00[AFR][1000 genomes]
rs61834116	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61834117	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834118	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61834119	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834123	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834126	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834135	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61834136	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834137	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834138	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834139	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61834140	1.00[AFR][1000 genomes]
rs61834141	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834142	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9429904	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392967	chr1:213271844-213490132	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213388200-213455400	Weak transcription	Placenta	Placenta
2	chr1:213401200-213447400	Weak transcription	Small Intestine	intestine
3	chr1:213402800-213454800	Weak transcription	Brain Substantia Nigra	brain
4	chr1:213405600-213440000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:213405600-213454800	Weak transcription	Brain Angular Gyrus	brain
6	chr1:213405800-213457600	Weak transcription	NHLF	lung
7	chr1:213406000-213450000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:213406200-213445600	Weak transcription	NHDF-Ad	bronchial
9	chr1:213406200-213454800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:213412600-213452400	Weak transcription	Right Ventricle	heart
11	chr1:213414600-213440000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:213414800-213445400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr1:213414800-213445600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr1:213415000-213440400	Weak transcription	Ovary	ovary
15	chr1:213415200-213440200	Weak transcription	Fetal Muscle Leg	muscle
16	chr1:213415400-213450200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr1:213415600-213447200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr1:213415600-213451000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr1:213415600-213453800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr1:213415800-213440000	Weak transcription	Aorta	Aorta
21	chr1:213415800-213440200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr1:213415800-213440200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr1:213416000-213440200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:213417200-213440200	Weak transcription	Fetal Stomach	stomach
25	chr1:213417200-213453600	Weak transcription	HSMMtube	muscle
26	chr1:213418400-213449200	Weak transcription	Fetal Lung	lung
27	chr1:213419000-213440200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr1:213419800-213439800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr1:213422200-213440400	Weak transcription	HSMM	muscle
30	chr1:213425000-213439800	Weak transcription	Left Ventricle	heart
31	chr1:213425000-213447400	Weak transcription	Pancreas	Pancrea
32	chr1:213425200-213440000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:213425400-213444200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:213427000-213446200	Weak transcription	A549	lung
35	chr1:213427000-213451400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr1:213428000-213442000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr1:213430400-213440200	Weak transcription	GM12878-XiMat	blood
38	chr1:213431200-213450600	Weak transcription	Psoas Muscle	Psoas
39	chr1:213432600-213440000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr1:213432600-213440200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr1:213433800-213454800	Weak transcription	Brain Anterior Caudate	brain
42	chr1:213434400-213440400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr1:213434400-213454800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr1:213434400-213454800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr1:213434600-213441800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr1:213434600-213449200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr1:213434600-213453800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr1:213434600-213453800	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr1:213435000-213445600	Weak transcription	K562	blood
50	chr1:213435000-213445800	Weak transcription	Liver	Liver

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