Variant report

Variant	rs1187806
Chromosome Location	chr1:213454598-213454599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs11120089	0.85[EUR][1000 genomes]
rs1187777	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1187788	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1187790	0.81[AFR][1000 genomes]
rs1187798	0.85[AFR][1000 genomes]
rs1187799	0.81[AFR][1000 genomes]
rs1187800	0.81[AFR][1000 genomes]
rs1187802	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1187803	0.91[AFR][1000 genomes]
rs12065249	0.85[EUR][1000 genomes]
rs12082134	0.96[EUR][1000 genomes]
rs1369215	0.85[AFR][1000 genomes]
rs1628854	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1656004	0.87[AFR][1000 genomes]
rs17742003	0.85[EUR][1000 genomes]
rs2359570	0.85[AFR][1000 genomes]
rs2654910	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2654912	0.85[AFR][1000 genomes]
rs2654913	0.85[AFR][1000 genomes]
rs2817985	1.00[CEU][hapmap];0.87[TSI][hapmap];0.96[EUR][1000 genomes]
rs2841421	0.85[AFR][1000 genomes]
rs2841422	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2841433	0.96[EUR][1000 genomes]
rs41307658	0.96[EUR][1000 genomes]
rs4655415	0.96[EUR][1000 genomes]
rs57140665	0.85[EUR][1000 genomes]
rs57376645	0.85[EUR][1000 genomes]
rs57670103	1.00[EUR][1000 genomes]
rs57845296	0.85[EUR][1000 genomes]
rs58865439	0.85[EUR][1000 genomes]
rs60194877	0.85[EUR][1000 genomes]
rs60727621	0.96[EUR][1000 genomes]
rs61832461	0.96[EUR][1000 genomes]
rs61832463	0.96[EUR][1000 genomes]
rs61832465	0.89[EUR][1000 genomes]
rs61832467	0.96[EUR][1000 genomes]
rs61832468	0.96[EUR][1000 genomes]
rs61832475	0.96[EUR][1000 genomes]
rs61832476	0.96[EUR][1000 genomes]
rs61832498	0.96[EUR][1000 genomes]
rs61832499	0.96[EUR][1000 genomes]
rs61832501	0.96[EUR][1000 genomes]
rs61832502	0.92[EUR][1000 genomes]
rs61832503	0.96[EUR][1000 genomes]
rs61832508	1.00[EUR][1000 genomes]
rs61832509	1.00[EUR][1000 genomes]
rs61832510	1.00[EUR][1000 genomes]
rs61832511	1.00[EUR][1000 genomes]
rs61832513	0.96[EUR][1000 genomes]
rs61832528	0.96[EUR][1000 genomes]
rs61832529	1.00[EUR][1000 genomes]
rs61834076	0.85[EUR][1000 genomes]
rs61834080	0.85[EUR][1000 genomes]
rs61834082	0.81[EUR][1000 genomes]
rs61834083	0.85[EUR][1000 genomes]
rs61834084	0.85[EUR][1000 genomes]
rs61834086	0.85[EUR][1000 genomes]
rs61834088	0.85[EUR][1000 genomes]
rs61834089	0.85[EUR][1000 genomes]
rs61834091	0.85[EUR][1000 genomes]
rs61834093	0.85[EUR][1000 genomes]
rs61834094	0.85[EUR][1000 genomes]
rs61834096	0.85[EUR][1000 genomes]
rs61834099	0.85[EUR][1000 genomes]
rs61834103	0.85[EUR][1000 genomes]
rs61834104	0.85[EUR][1000 genomes]
rs61834105	0.85[EUR][1000 genomes]
rs61834109	0.85[EUR][1000 genomes]
rs61834110	0.85[EUR][1000 genomes]
rs61834116	0.85[EUR][1000 genomes]
rs61834117	0.85[EUR][1000 genomes]
rs61834118	0.85[EUR][1000 genomes]
rs61834119	0.85[EUR][1000 genomes]
rs61834123	0.89[EUR][1000 genomes]
rs61834126	0.96[EUR][1000 genomes]
rs61834136	0.96[EUR][1000 genomes]
rs61834137	0.96[EUR][1000 genomes]
rs61834138	0.96[EUR][1000 genomes]
rs61834141	0.96[EUR][1000 genomes]
rs61834142	0.96[EUR][1000 genomes]
rs9429904	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392967	chr1:213271844-213490132	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213388200-213455400	Weak transcription	Placenta	Placenta
2	chr1:213402800-213454800	Weak transcription	Brain Substantia Nigra	brain
3	chr1:213405600-213454800	Weak transcription	Brain Angular Gyrus	brain
4	chr1:213405800-213457600	Weak transcription	NHLF	lung
5	chr1:213406200-213454800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:213433800-213454800	Weak transcription	Brain Anterior Caudate	brain
7	chr1:213434400-213454800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:213434400-213454800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:213435200-213456200	Weak transcription	Esophagus	oesophagus
10	chr1:213440000-213469800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:213440600-213454800	Weak transcription	Left Ventricle	heart
12	chr1:213440800-213457600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:213440800-213465800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:213441000-213454600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr1:213443600-213457000	Weak transcription	Lung	lung
16	chr1:213444000-213454800	Weak transcription	Fetal Brain Female	brain
17	chr1:213444000-213455000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:213444200-213457600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:213447400-213457600	Weak transcription	NHDF-Ad	bronchial
20	chr1:213447800-213454600	Weak transcription	Brain Hippocampus Middle	brain
21	chr1:213447800-213457000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:213447800-213457600	Weak transcription	Osteobl	bone
23	chr1:213448400-213454800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:213448400-213457600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:213449400-213457600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:213449400-213458200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:213449600-213457600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:213450800-213454600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr1:213451000-213454800	Weak transcription	HSMM	muscle
30	chr1:213452200-213454600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr1:213452800-213455800	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr1:213453200-213455600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:213453200-213455800	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr1:213453600-213454600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr1:213453600-213455600	Enhancers	HSMMtube	muscle
36	chr1:213453800-213454800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:213453800-213454800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr1:213453800-213455800	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr1:213454200-213454600	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr1:213454200-213455600	Enhancers	Psoas Muscle	Psoas
41	chr1:213454200-213456200	Enhancers	Fetal Muscle Leg	muscle
42	chr1:213454400-213455000	Enhancers	Brain Germinal Matrix	brain
43	chr1:213454400-213455000	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr1:213454400-213455400	Enhancers	Brain Cingulate Gyrus	brain
45	chr1:213454400-213455600	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr1:213454400-213455800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr1:213454400-213456000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr1:213454400-213456600	Weak transcription	HepG2	liver

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