Variant report

Variant	rs1187802
Chromosome Location	chr1:213456220-213456221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:213447316..213454346-chr1:213454663..213460102,7	K562	blood:
2	chr1:213454813..213457467-chr1:213460549..213462056,2	K562	blood:
3	chr1:213455506..213459333-chr1:213462711..213464404,3	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11120089	0.82[EUR][1000 genomes]
rs1187777	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1187788	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1187806	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12065249	0.82[EUR][1000 genomes]
rs12082134	0.93[EUR][1000 genomes]
rs1628854	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17742003	0.82[EUR][1000 genomes]
rs2654910	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2817985	1.00[CEU][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes]
rs2841422	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2841433	0.93[EUR][1000 genomes]
rs41307658	0.93[EUR][1000 genomes]
rs4655415	0.93[EUR][1000 genomes]
rs57140665	0.82[EUR][1000 genomes]
rs57376645	0.82[EUR][1000 genomes]
rs57670103	0.96[EUR][1000 genomes]
rs57845296	0.82[EUR][1000 genomes]
rs58865439	0.82[EUR][1000 genomes]
rs60194877	0.82[EUR][1000 genomes]
rs60727621	0.93[EUR][1000 genomes]
rs61832461	0.93[EUR][1000 genomes]
rs61832463	0.93[EUR][1000 genomes]
rs61832465	0.85[EUR][1000 genomes]
rs61832467	0.93[EUR][1000 genomes]
rs61832468	0.93[EUR][1000 genomes]
rs61832475	0.93[EUR][1000 genomes]
rs61832476	0.93[EUR][1000 genomes]
rs61832498	0.93[EUR][1000 genomes]
rs61832499	0.93[EUR][1000 genomes]
rs61832501	0.93[EUR][1000 genomes]
rs61832502	0.89[EUR][1000 genomes]
rs61832503	0.93[EUR][1000 genomes]
rs61832508	0.96[EUR][1000 genomes]
rs61832509	0.96[EUR][1000 genomes]
rs61832510	0.96[EUR][1000 genomes]
rs61832511	0.96[EUR][1000 genomes]
rs61832513	0.93[EUR][1000 genomes]
rs61832528	0.93[EUR][1000 genomes]
rs61832529	0.96[EUR][1000 genomes]
rs61834076	0.82[EUR][1000 genomes]
rs61834080	0.82[EUR][1000 genomes]
rs61834083	0.82[EUR][1000 genomes]
rs61834084	0.82[EUR][1000 genomes]
rs61834086	0.82[EUR][1000 genomes]
rs61834088	0.82[EUR][1000 genomes]
rs61834089	0.82[EUR][1000 genomes]
rs61834091	0.82[EUR][1000 genomes]
rs61834093	0.82[EUR][1000 genomes]
rs61834094	0.82[EUR][1000 genomes]
rs61834096	0.82[EUR][1000 genomes]
rs61834099	0.82[EUR][1000 genomes]
rs61834103	0.82[EUR][1000 genomes]
rs61834104	0.82[EUR][1000 genomes]
rs61834105	0.82[EUR][1000 genomes]
rs61834109	0.82[EUR][1000 genomes]
rs61834110	0.82[EUR][1000 genomes]
rs61834116	0.82[EUR][1000 genomes]
rs61834117	0.82[EUR][1000 genomes]
rs61834118	0.82[EUR][1000 genomes]
rs61834119	0.82[EUR][1000 genomes]
rs61834123	0.85[EUR][1000 genomes]
rs61834126	0.93[EUR][1000 genomes]
rs61834136	0.93[EUR][1000 genomes]
rs61834137	0.93[EUR][1000 genomes]
rs61834138	0.93[EUR][1000 genomes]
rs61834141	0.93[EUR][1000 genomes]
rs61834142	0.93[EUR][1000 genomes]
rs9429904	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392967	chr1:213271844-213490132	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213405800-213457600	Weak transcription	NHLF	lung
2	chr1:213440000-213469800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:213440800-213457600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:213440800-213465800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:213443600-213457000	Weak transcription	Lung	lung
6	chr1:213444200-213457600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:213447400-213457600	Weak transcription	NHDF-Ad	bronchial
8	chr1:213447800-213457000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:213447800-213457600	Weak transcription	Osteobl	bone
10	chr1:213448400-213457600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:213449400-213457600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:213449400-213458200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:213449600-213457600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:213454400-213456600	Weak transcription	HepG2	liver
15	chr1:213455200-213458200	Weak transcription	HSMM	muscle
16	chr1:213455400-213457600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:213455400-213458000	Weak transcription	Brain Cingulate Gyrus	brain

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