Variant report

Variant	rs2654910
Chromosome Location	chr1:213462908-213462909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:213459940..213462323-chr1:213462657..213464745,2	K562	blood:
2	chr1:213458864..213461162-chr1:213461203..213464194,2	K562	blood:
3	chr1:213462187..213463942-chr1:213466588..213468702,2	K562	blood:
4	chr1:213455506..213459333-chr1:213462711..213464404,3	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs11120089	0.85[EUR][1000 genomes]
rs1187777	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1187788	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1187790	0.83[AFR][1000 genomes]
rs1187798	0.87[AFR][1000 genomes]
rs1187799	0.83[AFR][1000 genomes]
rs1187800	0.83[AFR][1000 genomes]
rs1187802	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1187803	0.93[AFR][1000 genomes]
rs1187806	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12065249	0.85[EUR][1000 genomes]
rs12082134	0.96[EUR][1000 genomes]
rs1369215	0.87[AFR][1000 genomes]
rs1628854	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1656004	0.89[AFR][1000 genomes]
rs17742003	0.85[EUR][1000 genomes]
rs2359570	0.87[AFR][1000 genomes]
rs2654912	0.87[AFR][1000 genomes]
rs2654913	0.87[AFR][1000 genomes]
rs2817985	0.96[EUR][1000 genomes]
rs2841421	0.87[AFR][1000 genomes]
rs2841422	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2841433	0.96[EUR][1000 genomes]
rs41307658	0.96[EUR][1000 genomes]
rs4655415	0.96[EUR][1000 genomes]
rs57140665	0.85[EUR][1000 genomes]
rs57376645	0.85[EUR][1000 genomes]
rs57670103	1.00[EUR][1000 genomes]
rs57845296	0.85[EUR][1000 genomes]
rs58865439	0.85[EUR][1000 genomes]
rs60194877	0.85[EUR][1000 genomes]
rs60727621	0.96[EUR][1000 genomes]
rs61832461	0.96[EUR][1000 genomes]
rs61832463	0.96[EUR][1000 genomes]
rs61832465	0.89[EUR][1000 genomes]
rs61832467	0.96[EUR][1000 genomes]
rs61832468	0.96[EUR][1000 genomes]
rs61832475	0.96[EUR][1000 genomes]
rs61832476	0.96[EUR][1000 genomes]
rs61832498	0.96[EUR][1000 genomes]
rs61832499	0.96[EUR][1000 genomes]
rs61832501	0.96[EUR][1000 genomes]
rs61832502	0.92[EUR][1000 genomes]
rs61832503	0.96[EUR][1000 genomes]
rs61832508	1.00[EUR][1000 genomes]
rs61832509	1.00[EUR][1000 genomes]
rs61832510	1.00[EUR][1000 genomes]
rs61832511	1.00[EUR][1000 genomes]
rs61832513	0.96[EUR][1000 genomes]
rs61832528	0.96[EUR][1000 genomes]
rs61832529	1.00[EUR][1000 genomes]
rs61834076	0.85[EUR][1000 genomes]
rs61834080	0.85[EUR][1000 genomes]
rs61834082	0.81[EUR][1000 genomes]
rs61834083	0.85[EUR][1000 genomes]
rs61834084	0.85[EUR][1000 genomes]
rs61834086	0.85[EUR][1000 genomes]
rs61834088	0.85[EUR][1000 genomes]
rs61834089	0.85[EUR][1000 genomes]
rs61834091	0.85[EUR][1000 genomes]
rs61834093	0.85[EUR][1000 genomes]
rs61834094	0.85[EUR][1000 genomes]
rs61834096	0.85[EUR][1000 genomes]
rs61834099	0.85[EUR][1000 genomes]
rs61834103	0.85[EUR][1000 genomes]
rs61834104	0.85[EUR][1000 genomes]
rs61834105	0.85[EUR][1000 genomes]
rs61834109	0.85[EUR][1000 genomes]
rs61834110	0.85[EUR][1000 genomes]
rs61834116	0.85[EUR][1000 genomes]
rs61834117	0.85[EUR][1000 genomes]
rs61834118	0.85[EUR][1000 genomes]
rs61834119	0.85[EUR][1000 genomes]
rs61834123	0.89[EUR][1000 genomes]
rs61834126	0.96[EUR][1000 genomes]
rs61834136	0.96[EUR][1000 genomes]
rs61834137	0.96[EUR][1000 genomes]
rs61834138	0.96[EUR][1000 genomes]
rs61834141	0.96[EUR][1000 genomes]
rs61834142	0.96[EUR][1000 genomes]
rs9429904	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392967	chr1:213271844-213490132	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213440000-213469800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:213440800-213465800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:213458400-213466400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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