Variant report

Variant	rs58865439
Chromosome Location	chr1:213261259-213261260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:213259737..213262377-chr1:213276019..213278421,2	K562	blood:
2	chr1:213255405..213259890-chr1:213260216..213264624,5	K562	blood:
3	chr1:213257126..213258627-chr1:213261008..213263824,2	K562	blood:
4	chr1:213259322..213261269-chr1:213292143..213293839,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs11120089	1.00[EUR][1000 genomes]
rs1187777	0.82[EUR][1000 genomes]
rs1187788	0.85[EUR][1000 genomes]
rs1187802	0.82[EUR][1000 genomes]
rs1187806	0.85[EUR][1000 genomes]
rs12065249	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12082134	0.89[EUR][1000 genomes]
rs1628854	0.82[EUR][1000 genomes]
rs17742003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2654910	0.85[EUR][1000 genomes]
rs2817985	0.89[EUR][1000 genomes]
rs2841422	0.82[EUR][1000 genomes]
rs2841433	0.89[EUR][1000 genomes]
rs41277160	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs41277162	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs41307658	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4655415	0.89[EUR][1000 genomes]
rs57140665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57188196	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57352598	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57376645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57670103	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs57845296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58482452	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59892045	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60194877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60727621	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61832445	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61832446	1.00[AFR][1000 genomes]
rs61832447	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61832460	1.00[AFR][1000 genomes]
rs61832461	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61832463	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61832465	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61832467	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61832468	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61832470	1.00[AFR][1000 genomes]
rs61832471	1.00[AFR][1000 genomes]
rs61832474	1.00[AFR][1000 genomes]
rs61832475	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832476	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832498	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832499	0.89[EUR][1000 genomes]
rs61832501	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832502	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832503	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832508	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832509	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832510	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832511	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832513	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832528	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832529	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832533	1.00[AFR][1000 genomes]
rs61832534	1.00[AFR][1000 genomes]
rs61834072	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834076	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834077	1.00[AFR][1000 genomes]
rs61834080	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834082	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834083	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834084	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834086	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834087	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834088	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834089	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834091	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834092	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61834093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61834111	1.00[AFR][1000 genomes]
rs61834116	1.00[EUR][1000 genomes]
rs61834117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61834118	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61834119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61834123	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61834126	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834135	1.00[AFR][1000 genomes]
rs61834136	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834137	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834138	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834139	1.00[AFR][1000 genomes]
rs61834140	1.00[AFR][1000 genomes]
rs61834141	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834142	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9429904	0.89[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213228800-213263200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:213229400-213283400	Weak transcription	Hela-S3	cervix
3	chr1:213233000-213262600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:213240200-213272600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:213240400-213261600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:213240400-213274600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:213243800-213262600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr1:213244200-213268000	Weak transcription	Brain Substantia Nigra	brain
9	chr1:213244200-213271000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:213244200-213273200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr1:213244200-213273200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr1:213244200-213296200	Weak transcription	NHDF-Ad	bronchial
13	chr1:213246800-213283800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:213251200-213293000	Weak transcription	NH-A	brain
15	chr1:213251400-213263800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:213251600-213272000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr1:213252400-213264400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:213252600-213262200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr1:213252600-213297200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:213252800-213262000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:213252800-213263600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:213253000-213263000	Weak transcription	Colonic Mucosa	Colon
23	chr1:213253000-213263200	Weak transcription	Thymus	Thymus
24	chr1:213253000-213271200	Weak transcription	Small Intestine	intestine
25	chr1:213253200-213262800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr1:213253200-213275600	Weak transcription	Colon Smooth Muscle	Colon
27	chr1:213253200-213277600	Weak transcription	Gastric	stomach
28	chr1:213253600-213262800	Strong transcription	Adipose Nuclei	Adipose
29	chr1:213254000-213261800	Strong transcription	Fetal Muscle Leg	muscle
30	chr1:213254800-213297400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr1:213255200-213264800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr1:213255200-213266000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:213255200-213270800	Weak transcription	GM12878-XiMat	blood
34	chr1:213255200-213273400	Weak transcription	Fetal Brain Male	brain
35	chr1:213255200-213279400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr1:213255400-213267200	Weak transcription	Brain Hippocampus Middle	brain
37	chr1:213255400-213270400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr1:213255600-213263000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr1:213255600-213271800	Weak transcription	Right Ventricle	heart
40	chr1:213256600-213262000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr1:213256600-213262600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr1:213256800-213261600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr1:213256800-213262600	Strong transcription	Primary B cells from cord blood	blood
44	chr1:213256800-213263000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr1:213256800-213284000	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr1:213257000-213261800	Strong transcription	Left Ventricle	heart
47	chr1:213257000-213262600	Weak transcription	NHEK	skin
48	chr1:213257000-213262800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:213257200-213262600	Strong transcription	Primary hematopoietic stem cells	blood
50	chr1:213258000-213261600	Strong transcription	Rectal Mucosa Donor 31	rectum

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