Variant report

Variant	rs61834104
Chromosome Location	chr1:213280393-213280394
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:213188780..213190690-chr1:213279361..213282222,2	K562	blood:
2	chr1:213275043..213276848-chr1:213278385..213281105,2	K562	blood:

Variant related genes	Relation type
ENSG00000174606	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs11120089	1.00[EUR][1000 genomes]
rs1187777	0.82[EUR][1000 genomes]
rs1187788	0.85[EUR][1000 genomes]
rs1187802	0.82[EUR][1000 genomes]
rs1187806	0.85[EUR][1000 genomes]
rs12065249	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12082134	0.89[EUR][1000 genomes]
rs1628854	0.82[EUR][1000 genomes]
rs17742003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2654910	0.85[EUR][1000 genomes]
rs2817985	0.89[EUR][1000 genomes]
rs2841422	0.82[EUR][1000 genomes]
rs2841433	0.89[EUR][1000 genomes]
rs41277160	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs41277162	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs41307658	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4655415	0.89[EUR][1000 genomes]
rs57140665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57188196	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57352598	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs57376645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57670103	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs57845296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58482452	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs58865439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59892045	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs60194877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60727621	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61832445	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs61832446	1.00[AFR][1000 genomes]
rs61832447	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs61832460	1.00[AFR][1000 genomes]
rs61832461	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61832463	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61832465	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61832467	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61832468	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61832470	1.00[AFR][1000 genomes]
rs61832471	1.00[AFR][1000 genomes]
rs61832474	1.00[AFR][1000 genomes]
rs61832475	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832476	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832498	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832499	0.89[EUR][1000 genomes]
rs61832501	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832502	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832503	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832508	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832509	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832510	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832511	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832513	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832528	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832529	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832533	1.00[AFR][1000 genomes]
rs61832534	1.00[AFR][1000 genomes]
rs61834072	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834076	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834077	1.00[AFR][1000 genomes]
rs61834080	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834082	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834083	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834084	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834086	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834087	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834088	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834089	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834091	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834092	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs61834093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61834111	1.00[AFR][1000 genomes]
rs61834116	1.00[EUR][1000 genomes]
rs61834117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61834118	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61834119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61834123	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61834126	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834135	1.00[AFR][1000 genomes]
rs61834136	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834137	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834138	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834139	1.00[AFR][1000 genomes]
rs61834140	1.00[AFR][1000 genomes]
rs61834141	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834142	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9429904	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392967	chr1:213271844-213490132	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213229400-213283400	Weak transcription	Hela-S3	cervix
2	chr1:213244200-213296200	Weak transcription	NHDF-Ad	bronchial
3	chr1:213246800-213283800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:213251200-213293000	Weak transcription	NH-A	brain
5	chr1:213252600-213297200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:213254800-213297400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:213256800-213284000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr1:213258400-213280600	Weak transcription	A549	lung
9	chr1:213258800-213284200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:213259800-213284000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr1:213261400-213280800	Weak transcription	Primary T cells from cord blood	blood
12	chr1:213261400-213280800	Weak transcription	Stomach Mucosa	stomach
13	chr1:213261400-213284000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr1:213261600-213280400	Weak transcription	K562	blood
15	chr1:213261600-213281200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:213261600-213283800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr1:213261600-213283800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr1:213261600-213283800	Weak transcription	HSMMtube	muscle
19	chr1:213261600-213284000	Weak transcription	Pancreas	Pancrea
20	chr1:213261600-213284000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr1:213261600-213293000	Weak transcription	NHLF	lung
22	chr1:213261600-213296000	Weak transcription	Lung	lung
23	chr1:213261600-213309200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr1:213261600-213327400	Weak transcription	Aorta	Aorta
25	chr1:213261800-213284000	Weak transcription	Left Ventricle	heart
26	chr1:213261800-213285200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr1:213262200-213284400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr1:213262600-213280600	Weak transcription	Osteobl	bone
29	chr1:213262600-213284400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr1:213263200-213284000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr1:213268200-213281600	Weak transcription	HepG2	liver
32	chr1:213268400-213284400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr1:213268600-213284400	Weak transcription	Brain Angular Gyrus	brain
34	chr1:213268800-213282200	Weak transcription	Brain Anterior Caudate	brain
35	chr1:213269200-213293000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr1:213269200-213296200	Weak transcription	Brain Hippocampus Middle	brain
37	chr1:213269400-213284000	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr1:213269400-213308400	Weak transcription	Ovary	ovary
39	chr1:213269600-213280600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr1:213269600-213311800	Weak transcription	Primary B cells from cord blood	blood
41	chr1:213269800-213284000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr1:213269800-213284000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr1:213269800-213285800	Weak transcription	Dnd41	blood
44	chr1:213270000-213296000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr1:213270200-213280400	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr1:213271000-213284200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr1:213271000-213297000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr1:213271200-213280600	Weak transcription	Fetal Lung	lung
49	chr1:213271200-213296200	Weak transcription	Fetal Intestine Small	intestine
50	chr1:213271200-213309200	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links