The 2.0 version of rSNPBase

Variant report

Variant rs41277160
Chromosome Location chr1:213167124-213167125
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:213151600-213167800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr1:213151800-213169400 Weak transcription Colonic Mucosa Colon
3 chr1:213153400-213173000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr1:213153800-213168600 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr1:213153800-213170200 Weak transcription Stomach Smooth Muscle stomach
6 chr1:213154400-213167600 Weak transcription Adipose Nuclei Adipose
7 chr1:213154400-213178200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr1:213154600-213170200 Weak transcription Brain Cingulate Gyrus brain
9 chr1:213154600-213187400 Weak transcription Rectal Smooth Muscle rectum
10 chr1:213154800-213167600 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:213154800-213177400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr1:213154800-213178200 Weak transcription Brain Angular Gyrus brain
13 chr1:213154800-213188000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr1:213154800-213188400 Weak transcription Spleen Spleen
15 chr1:213155000-213168400 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr1:213155200-213177800 Weak transcription Right Ventricle heart
17 chr1:213155400-213178400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
18 chr1:213155600-213168200 Weak transcription Thymus Thymus
19 chr1:213155600-213168800 Weak transcription Colon Smooth Muscle Colon
20 chr1:213155600-213169400 Weak transcription Lung lung
21 chr1:213155600-213178400 Weak transcription Gastric stomach
22 chr1:213155600-213188000 Weak transcription Aorta Aorta
23 chr1:213155600-213188000 Weak transcription Esophagus oesophagus
24 chr1:213155800-213168400 Strong transcription HUES64 Cell Line embryonic stem cell
25 chr1:213156000-213168800 Weak transcription Right Atrium heart
26 chr1:213156000-213176800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr1:213156000-213177200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr1:213156200-213168200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr1:213156200-213168600 Strong transcription iPS-20b Cell Line embryonic stem cell
30 chr1:213156200-213187400 Weak transcription Fetal Brain Male brain
31 chr1:213156200-213188000 Weak transcription Pancreas Pancrea
32 chr1:213156400-213170000 Weak transcription Brain Anterior Caudate brain
33 chr1:213156600-213170400 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr1:213156600-213176600 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr1:213157200-213178400 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr1:213158400-213188000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
37 chr1:213158800-213169200 Weak transcription Fetal Stomach stomach
38 chr1:213160200-213188000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
39 chr1:213160400-213167400 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr1:213160400-213173000 Weak transcription Primary hematopoietic stem cells blood
41 chr1:213160400-213187200 Weak transcription NHLF lung
42 chr1:213160600-213169400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr1:213161000-213171600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr1:213161800-213168000 Weak transcription Hela-S3 cervix
45 chr1:213161800-213169600 Weak transcription Ovary ovary
46 chr1:213161800-213170000 Weak transcription HUVEC blood vessel
47 chr1:213161800-213171600 Strong transcription Monocytes-CD14+_RO01746 blood
48 chr1:213162000-213167200 Weak transcription Fetal Intestine Small intestine
49 chr1:213162000-213167600 Weak transcription NHEK skin
50 chr1:213162000-213168400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015