Variant report

Variant	rs61834141
Chromosome Location	chr1:213371640-213371641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs11120089	0.89[EUR][1000 genomes]
rs1187777	0.93[EUR][1000 genomes]
rs1187788	0.96[EUR][1000 genomes]
rs1187802	0.93[EUR][1000 genomes]
rs1187806	0.96[EUR][1000 genomes]
rs12065249	0.89[EUR][1000 genomes]
rs12082134	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1628854	0.93[EUR][1000 genomes]
rs17742003	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2654910	0.96[EUR][1000 genomes]
rs2817985	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2841422	0.93[EUR][1000 genomes]
rs2841433	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41277160	1.00[AFR][1000 genomes]
rs41277162	1.00[AFR][1000 genomes]
rs41307658	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57140665	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57188196	1.00[AFR][1000 genomes]
rs57352598	1.00[AFR][1000 genomes]
rs57376645	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57670103	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57845296	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58482452	1.00[AFR][1000 genomes]
rs58865439	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59892045	1.00[AFR][1000 genomes]
rs60194877	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60727621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61832445	1.00[AFR][1000 genomes]
rs61832446	1.00[AFR][1000 genomes]
rs61832447	1.00[AFR][1000 genomes]
rs61832460	1.00[AFR][1000 genomes]
rs61832461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832470	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61832471	1.00[AFR][1000 genomes]
rs61832474	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61832475	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832476	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832498	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832501	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832502	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832503	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832508	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832509	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832510	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832511	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832513	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832528	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832529	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832533	1.00[AFR][1000 genomes]
rs61832534	1.00[AFR][1000 genomes]
rs61834072	1.00[AFR][1000 genomes]
rs61834076	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834077	1.00[AFR][1000 genomes]
rs61834080	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834082	0.85[EUR][1000 genomes]
rs61834083	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834084	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834086	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834087	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61834088	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834089	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834091	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834092	1.00[AFR][1000 genomes]
rs61834093	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834094	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834096	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834099	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834102	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61834103	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834104	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834105	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834109	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834110	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834111	1.00[AFR][1000 genomes]
rs61834116	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61834117	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834118	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61834119	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834123	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834135	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61834136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834139	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61834140	1.00[AFR][1000 genomes]
rs61834142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9429904	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392967	chr1:213271844-213490132	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv1794228	chr1:213355519-213379480	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1012014	chr1:213371127-213423214	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213301000-213374800	Weak transcription	HSMM	muscle
2	chr1:213326600-213422200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:213328200-213387200	Weak transcription	Spleen	Spleen
4	chr1:213337800-213374400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:213340600-213424600	Weak transcription	Pancreas	Pancrea
6	chr1:213345600-213404600	Weak transcription	Osteobl	bone
7	chr1:213346200-213387400	Weak transcription	Gastric	stomach
8	chr1:213350400-213383200	Weak transcription	Placenta	Placenta
9	chr1:213357800-213387200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:213358000-213375000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:213360400-213373200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr1:213360400-213405200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:213360600-213378000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr1:213360800-213372200	Weak transcription	Left Ventricle	heart
15	chr1:213361600-213386600	Weak transcription	Aorta	Aorta
16	chr1:213362200-213415400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr1:213362800-213372400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:213364400-213372800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr1:213367000-213372200	Weak transcription	Ovary	ovary
20	chr1:213368200-213378200	Weak transcription	K562	blood
21	chr1:213368200-213386600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:213368200-213387200	Weak transcription	Lung	lung
23	chr1:213369600-213388800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:213369800-213398200	Weak transcription	Fetal Heart	heart
25	chr1:213370000-213374400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:213370400-213372000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
27	chr1:213370600-213380200	Weak transcription	Fetal Stomach	stomach
28	chr1:213370800-213371800	ZNF genes & repeats	Fetal Lung	lung
29	chr1:213370800-213372200	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr1:213370800-213372800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
31	chr1:213370800-213380600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr1:213370800-213427600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr1:213371000-213371800	ZNF genes & repeats	Adipose Nuclei	Adipose
34	chr1:213371000-213373000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:213371000-213373000	ZNF genes & repeats	Primary T cells from cord blood	blood
36	chr1:213371000-213373200	ZNF genes & repeats	Primary B cells from cord blood	blood
37	chr1:213371000-213389400	Weak transcription	Right Ventricle	heart
38	chr1:213371200-213371800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
39	chr1:213371200-213372600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr1:213371200-213372600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
41	chr1:213371200-213372800	ZNF genes & repeats	Liver	Liver
42	chr1:213371400-213371800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr1:213371400-213372800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr1:213371400-213374600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr1:213371600-213371800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr1:213371600-213372000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr1:213371600-213372000	Weak transcription	Primary hematopoietic stem cells	blood
48	chr1:213371600-213372800	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr1:213371600-213373000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr1:213371600-213373000	Strong transcription	Duodenum Smooth Muscle	Duodenum

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