Variant report

Variant	rs61832508
Chromosome Location	chr1:213466811-213466812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:213462187..213463942-chr1:213466588..213468702,2	K562	blood:
2	chr1:213464547..213466524-chr1:213466664..213468463,2	K562	blood:
3	chr1:213466093..213467963-chr1:213479661..213482315,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs11120089	0.85[EUR][1000 genomes]
rs1187777	0.96[EUR][1000 genomes]
rs1187788	1.00[EUR][1000 genomes]
rs1187802	0.96[EUR][1000 genomes]
rs1187806	1.00[EUR][1000 genomes]
rs12065249	0.85[EUR][1000 genomes]
rs12082134	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1628854	0.89[EUR][1000 genomes]
rs17742003	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2654910	1.00[EUR][1000 genomes]
rs2817985	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2841422	0.96[EUR][1000 genomes]
rs2841433	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41307658	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4655415	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57140665	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs57376645	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs57670103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57845296	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58865439	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs60194877	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs60727621	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61832460	1.00[AFR][1000 genomes]
rs61832461	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832463	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832465	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832467	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832468	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832470	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs61832471	1.00[AFR][1000 genomes]
rs61832474	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs61832475	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832476	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832498	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832499	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832501	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832502	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832503	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832513	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832528	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832533	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs61832534	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs61834080	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834082	0.81[EUR][1000 genomes]
rs61834083	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834084	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834086	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834087	1.00[AFR][1000 genomes]
rs61834088	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834089	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834091	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834092	1.00[AFR][1000 genomes]
rs61834093	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834094	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834096	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834099	0.85[EUR][1000 genomes]
rs61834102	1.00[AFR][1000 genomes]
rs61834103	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834104	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834105	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834109	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834110	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834111	1.00[AFR][1000 genomes]
rs61834116	0.85[EUR][1000 genomes]
rs61834117	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61834118	0.85[EUR][1000 genomes]
rs61834119	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61834123	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61834126	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61834135	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs61834136	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61834137	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61834138	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61834139	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs61834140	1.00[AFR][1000 genomes]
rs61834141	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61834142	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9429904	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392967	chr1:213271844-213490132	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213440000-213469800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:213464000-213467000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:213465600-213467200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr1:213465800-213467000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:213466400-213467000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:213466400-213469200	Weak transcription	Brain Germinal Matrix	brain
7	chr1:213466600-213476400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links