Variant report

Variant	rs61834136
Chromosome Location	chr1:213361336-213361337
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs11120089	0.89[EUR][1000 genomes]
rs1187777	0.93[EUR][1000 genomes]
rs1187788	0.96[EUR][1000 genomes]
rs1187802	0.93[EUR][1000 genomes]
rs1187806	0.96[EUR][1000 genomes]
rs12065249	0.89[EUR][1000 genomes]
rs12082134	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1628854	0.93[EUR][1000 genomes]
rs17742003	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2654910	0.96[EUR][1000 genomes]
rs2817985	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2841422	0.93[EUR][1000 genomes]
rs2841433	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41277160	1.00[AFR][1000 genomes]
rs41277162	1.00[AFR][1000 genomes]
rs41307658	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57140665	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57188196	1.00[AFR][1000 genomes]
rs57352598	1.00[AFR][1000 genomes]
rs57376645	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57670103	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57845296	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58482452	1.00[AFR][1000 genomes]
rs58865439	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59892045	1.00[AFR][1000 genomes]
rs60194877	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60727621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61832445	1.00[AFR][1000 genomes]
rs61832446	1.00[AFR][1000 genomes]
rs61832447	1.00[AFR][1000 genomes]
rs61832460	1.00[AFR][1000 genomes]
rs61832461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832470	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61832471	1.00[AFR][1000 genomes]
rs61832474	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61832475	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832476	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832498	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832501	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832502	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832503	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832508	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832509	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832510	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832511	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832513	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832528	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832529	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61832533	1.00[AFR][1000 genomes]
rs61832534	1.00[AFR][1000 genomes]
rs61834072	1.00[AFR][1000 genomes]
rs61834076	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834077	1.00[AFR][1000 genomes]
rs61834080	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834082	0.85[EUR][1000 genomes]
rs61834083	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834084	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834086	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834087	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61834088	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834089	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834091	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834092	1.00[AFR][1000 genomes]
rs61834093	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834094	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834096	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834099	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834102	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61834103	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834104	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834105	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834109	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834110	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61834111	1.00[AFR][1000 genomes]
rs61834116	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61834117	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834118	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61834119	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834123	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61834135	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61834137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834139	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61834140	1.00[AFR][1000 genomes]
rs61834141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9429904	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392967	chr1:213271844-213490132	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv1794228	chr1:213355519-213379480	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213301000-213371000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:213301000-213374800	Weak transcription	HSMM	muscle
3	chr1:213310000-213370400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr1:213326600-213422200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:213328200-213387200	Weak transcription	Spleen	Spleen
6	chr1:213337800-213374400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:213340600-213424600	Weak transcription	Pancreas	Pancrea
8	chr1:213345600-213404600	Weak transcription	Osteobl	bone
9	chr1:213346200-213387400	Weak transcription	Gastric	stomach
10	chr1:213350400-213383200	Weak transcription	Placenta	Placenta
11	chr1:213357800-213387200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:213358000-213375000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:213358200-213362600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr1:213359000-213363200	Weak transcription	Psoas Muscle	Psoas
15	chr1:213359400-213364800	Weak transcription	HSMMtube	muscle
16	chr1:213359600-213361600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:213359600-213362600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:213359800-213361600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
19	chr1:213360000-213362400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:213360000-213371400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:213360200-213361600	ZNF genes & repeats	Aorta	Aorta
22	chr1:213360200-213362600	Strong transcription	Fetal Stomach	stomach
23	chr1:213360200-213363800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr1:213360200-213368000	Weak transcription	Right Ventricle	heart
25	chr1:213360400-213361400	Weak transcription	Ovary	ovary
26	chr1:213360400-213361400	Weak transcription	Small Intestine	intestine
27	chr1:213360400-213363000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:213360400-213363200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr1:213360400-213363800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:213360400-213369600	Weak transcription	Liver	Liver
31	chr1:213360400-213371000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:213360400-213371000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:213360400-213371000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:213360400-213371200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr1:213360400-213373200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr1:213360400-213405200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr1:213360600-213361800	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr1:213360600-213363200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr1:213360600-213363800	Weak transcription	Thymus	Thymus
40	chr1:213360600-213367800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr1:213360600-213370400	Weak transcription	Primary B cells from cord blood	blood
42	chr1:213360600-213370800	Weak transcription	Fetal Lung	lung
43	chr1:213360600-213378000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr1:213360800-213361600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr1:213360800-213372200	Weak transcription	Left Ventricle	heart
46	chr1:213361200-213361400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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