Variant report

Variant	rs61834082
Chromosome Location	chr1:213228232-213228233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:213227020..213230163-chr1:213238856..213241134,3	K562	blood:
2	chr1:213208745..213211357-chr1:213227758..213229536,2	K562	blood:
3	chr1:213187470..213190491-chr1:213226367..213230214,4	K562	blood:
4	chr1:213188812..213190491-chr1:213227664..213229877,2	K562	blood:

Variant related genes	Relation type
ENSG00000174606	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11120089	0.96[EUR][1000 genomes]
rs1187788	0.81[EUR][1000 genomes]
rs1187806	0.81[EUR][1000 genomes]
rs12065249	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12082134	0.85[EUR][1000 genomes]
rs17742003	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2654910	0.81[EUR][1000 genomes]
rs2817985	0.85[EUR][1000 genomes]
rs2841433	0.85[EUR][1000 genomes]
rs41277160	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41277162	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41307658	0.85[EUR][1000 genomes]
rs4655415	0.85[EUR][1000 genomes]
rs57140665	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57188196	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57352598	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57376645	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57845296	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58482452	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58865439	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59892045	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60194877	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60727621	0.85[EUR][1000 genomes]
rs61832445	1.00[ASN][1000 genomes]
rs61832447	1.00[ASN][1000 genomes]
rs61832461	0.85[EUR][1000 genomes]
rs61832463	0.85[EUR][1000 genomes]
rs61832467	0.85[EUR][1000 genomes]
rs61832468	0.85[EUR][1000 genomes]
rs61832475	0.85[EUR][1000 genomes]
rs61832476	0.85[EUR][1000 genomes]
rs61832498	0.85[EUR][1000 genomes]
rs61832499	0.85[EUR][1000 genomes]
rs61832501	0.85[EUR][1000 genomes]
rs61832502	0.81[EUR][1000 genomes]
rs61832503	0.85[EUR][1000 genomes]
rs61832508	0.81[EUR][1000 genomes]
rs61832509	0.81[EUR][1000 genomes]
rs61832510	0.81[EUR][1000 genomes]
rs61834072	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834076	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834080	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834083	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834084	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834086	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834087	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834088	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834089	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834091	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834092	0.95[ASN][1000 genomes]
rs61834093	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834094	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834096	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834099	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834102	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834103	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834104	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834105	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834109	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834110	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61834116	0.96[EUR][1000 genomes]
rs61834117	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61834118	0.96[EUR][1000 genomes]
rs61834119	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61834123	0.92[EUR][1000 genomes]
rs61834126	0.85[EUR][1000 genomes]
rs61834136	0.85[EUR][1000 genomes]
rs61834137	0.85[EUR][1000 genomes]
rs61834138	0.85[EUR][1000 genomes]
rs61834141	0.85[EUR][1000 genomes]
rs61834142	0.85[EUR][1000 genomes]
rs9429904	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008594	chr1:213110654-213236750	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213225200-213253400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:213225200-213254400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:213225400-213228400	Weak transcription	Gastric	stomach
4	chr1:213225400-213229600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:213225400-213229600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:213225400-213254000	Weak transcription	Aorta	Aorta
7	chr1:213225400-213254000	Weak transcription	Left Ventricle	heart
8	chr1:213225400-213256600	Weak transcription	Ovary	ovary
9	chr1:213225600-213228400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:213225600-213229400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr1:213225600-213229800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:213225600-213229800	Weak transcription	Fetal Intestine Small	intestine
13	chr1:213225600-213234000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:213225600-213236000	Weak transcription	Right Atrium	heart
15	chr1:213225600-213243600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:213225600-213244000	Weak transcription	HSMM	muscle
17	chr1:213225800-213228400	Weak transcription	Osteobl	bone
18	chr1:213225800-213228600	Weak transcription	NH-A	brain
19	chr1:213225800-213229200	Weak transcription	Brain Angular Gyrus	brain
20	chr1:213225800-213229600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr1:213225800-213229800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr1:213225800-213230200	Weak transcription	Fetal Intestine Large	intestine
23	chr1:213225800-213230200	Weak transcription	Psoas Muscle	Psoas
24	chr1:213225800-213234200	Weak transcription	Primary B cells from cord blood	blood
25	chr1:213225800-213252800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:213225800-213254000	Weak transcription	Primary T cells from cord blood	blood
27	chr1:213226000-213233200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr1:213226000-213254000	Weak transcription	Fetal Muscle Leg	muscle
29	chr1:213226200-213228800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr1:213226200-213243800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr1:213226200-213252800	Weak transcription	Fetal Stomach	stomach
32	chr1:213226400-213228600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr1:213226400-213228800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr1:213226400-213229400	Weak transcription	NHDF-Ad	bronchial
35	chr1:213226400-213229800	Weak transcription	Brain Substantia Nigra	brain
36	chr1:213226400-213230200	Weak transcription	Pancreas	Pancrea
37	chr1:213226600-213228400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr1:213226600-213228600	Weak transcription	A549	lung
39	chr1:213226600-213229000	Weak transcription	Liver	Liver
40	chr1:213226600-213229200	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr1:213226600-213231400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr1:213226600-213232000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:213226800-213229400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr1:213226800-213230600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr1:213226800-213237400	Weak transcription	Colon Smooth Muscle	Colon
46	chr1:213227000-213228600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr1:213227000-213228600	Weak transcription	Hela-S3	cervix
48	chr1:213227000-213229400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr1:213227000-213229800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr1:213227000-213230800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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