Variant report

Variant	rs61834091
Chromosome Location	chr1:213243483-213243484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr1:213243413-213244058	MCF10A-Er-Src	breast:	n/a	n/a
2	IRF1	chr1:213242575-213244408	K562	blood:	n/a	chr1:213243411-213243424
3	RAD21	chr1:213243411-213244145	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:213239437..213241283-chr1:213243355..213245303,2	K562	blood:
2	chr1:213237057..213238855-chr1:213243285..213244923,2	MCF-7	breast:

Variant related genes	Relation type
RPS6KC1	TF binding region

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs11120089	1.00[EUR][1000 genomes]
rs1187777	0.82[EUR][1000 genomes]
rs1187788	0.85[EUR][1000 genomes]
rs1187802	0.82[EUR][1000 genomes]
rs1187806	0.85[EUR][1000 genomes]
rs12065249	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12082134	0.89[EUR][1000 genomes]
rs1628854	0.82[EUR][1000 genomes]
rs17742003	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2654910	0.85[EUR][1000 genomes]
rs2817985	0.89[EUR][1000 genomes]
rs2841422	0.82[EUR][1000 genomes]
rs2841433	0.89[EUR][1000 genomes]
rs41277160	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41277162	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41307658	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4655415	0.89[EUR][1000 genomes]
rs57140665	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57188196	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57352598	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57376645	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57670103	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs57845296	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58482452	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58865439	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59892045	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60194877	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60727621	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832445	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61832446	1.00[AFR][1000 genomes]
rs61832447	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61832460	1.00[AFR][1000 genomes]
rs61832461	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832463	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832465	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61832467	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832468	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832470	1.00[AFR][1000 genomes]
rs61832471	1.00[AFR][1000 genomes]
rs61832474	1.00[AFR][1000 genomes]
rs61832475	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832476	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832498	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832499	0.89[EUR][1000 genomes]
rs61832501	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832502	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832503	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832508	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832509	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832510	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832511	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61832513	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832528	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61832529	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61834072	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834076	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834077	1.00[AFR][1000 genomes]
rs61834080	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834082	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834083	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834084	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834086	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834087	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834088	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834089	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834092	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61834093	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834094	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834096	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834099	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834102	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834103	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834104	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834105	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834109	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834110	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61834111	1.00[AFR][1000 genomes]
rs61834116	1.00[EUR][1000 genomes]
rs61834117	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61834118	1.00[EUR][1000 genomes]
rs61834119	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61834123	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61834126	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834135	1.00[AFR][1000 genomes]
rs61834136	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834137	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834138	0.89[EUR][1000 genomes]
rs61834139	1.00[AFR][1000 genomes]
rs61834140	1.00[AFR][1000 genomes]
rs61834141	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61834142	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9429904	0.89[EUR][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213225200-213253400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:213225200-213254400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:213225400-213254000	Weak transcription	Aorta	Aorta
4	chr1:213225400-213254000	Weak transcription	Left Ventricle	heart
5	chr1:213225400-213256600	Weak transcription	Ovary	ovary
6	chr1:213225600-213243600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:213225600-213244000	Weak transcription	HSMM	muscle
8	chr1:213225800-213252800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:213225800-213254000	Weak transcription	Primary T cells from cord blood	blood
10	chr1:213226000-213254000	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:213226200-213243800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:213226200-213252800	Weak transcription	Fetal Stomach	stomach
13	chr1:213227000-213254000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:213228000-213254200	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:213228600-213244000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr1:213228800-213263200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:213229400-213254200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:213229400-213283400	Weak transcription	Hela-S3	cervix
19	chr1:213231600-213254000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr1:213232800-213254200	Weak transcription	HepG2	liver
21	chr1:213233000-213262600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:213234400-213252800	Weak transcription	Fetal Intestine Small	intestine
23	chr1:213234800-213261000	Weak transcription	Stomach Mucosa	stomach
24	chr1:213235000-213254200	Weak transcription	Primary B cells from cord blood	blood
25	chr1:213235200-213243800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr1:213237400-213252800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr1:213238000-213243600	Weak transcription	Fetal Lung	lung
28	chr1:213239200-213254400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr1:213240000-213243800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr1:213240000-213254000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr1:213240200-213243600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr1:213240200-213272600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr1:213240400-213254400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr1:213240400-213261600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr1:213240400-213274600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr1:213240600-213261200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr1:213240800-213243800	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr1:213241000-213259400	Weak transcription	Brain Anterior Caudate	brain
39	chr1:213241200-213261000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:213241400-213254200	Weak transcription	Right Ventricle	heart
41	chr1:213242600-213243800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr1:213242600-213244000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:213242600-213244200	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr1:213242600-213246800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr1:213242800-213243600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr1:213242800-213243800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr1:213242800-213243800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr1:213243000-213243800	Enhancers	Primary hematopoietic stem cells	blood
49	chr1:213243000-213243800	Weak transcription	Adipose Nuclei	Adipose
50	chr1:213243000-213244000	Enhancers	Cortex derived primary cultured neurospheres	brain

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