Variant report

Variant	rs59454401
Chromosome Location	chr1:213122373-213122374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11804466	1.00[ASN][1000 genomes]
rs11807270	1.00[ASN][1000 genomes]
rs11808834	1.00[ASN][1000 genomes]
rs11810592	1.00[ASN][1000 genomes]
rs55675185	1.00[ASN][1000 genomes]
rs56004152	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57768681	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58153233	1.00[ASN][1000 genomes]
rs58318035	1.00[ASN][1000 genomes]
rs59560971	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59694884	1.00[ASN][1000 genomes]
rs60610968	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6684088	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6699046	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74140524	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7518378	1.00[ASN][1000 genomes]
rs7533253	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008594	chr1:213110654-213236750	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213116400-213123400	Weak transcription	Right Atrium	heart
2	chr1:213120200-213122400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:213120400-213123000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:213121200-213122600	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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