Variant report

Variant	rs41277178
Chromosome Location	chr1:214506366-214506367
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214506018..214506945-chr1:214758248..214759072,4	MCF-7	breast:
2	chr1:214452237..214456498-chr1:214498464..214506870,12	MCF-7	breast:
3	chr1:214505285..214508273-chr1:214509081..214512875,3	K562	blood:
4	chr1:214506031..214506834-chr1:215699653..215700161,2	K562	blood:
5	chr1:214434232..214435104-chr1:214506053..214506957,2	K562	blood:
6	chr1:214505230..214508273-chr1:214509081..214512875,4	K562	blood:
7	chr1:214505527..214506582-chr1:214801187..214801906,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143499	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10157166	0.90[ASN][1000 genomes]
rs11120300	0.90[ASN][1000 genomes]
rs17729519	1.00[ASN][1000 genomes]
rs6683913	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7538203	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7552475	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214471000-214517400	Weak transcription	Fetal Kidney	kidney
2	chr1:214477400-214506400	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:214477400-214506400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr1:214477400-214511000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:214482200-214510600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:214484400-214510800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:214484800-214507800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:214484800-214522000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:214485000-214506400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:214485000-214513200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:214486200-214526000	Weak transcription	Psoas Muscle	Psoas
12	chr1:214487400-214509400	Strong transcription	Primary T cells from cord blood	blood
13	chr1:214487800-214510600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:214488200-214517600	Weak transcription	Brain Germinal Matrix	brain
15	chr1:214488200-214520800	Weak transcription	Hela-S3	cervix
16	chr1:214488800-214510600	Weak transcription	Fetal Brain Male	brain
17	chr1:214489400-214506600	Weak transcription	Ovary	ovary
18	chr1:214490800-214518200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr1:214492800-214509200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr1:214493000-214510600	Weak transcription	Aorta	Aorta
21	chr1:214493000-214519800	Weak transcription	Brain Hippocampus Middle	brain
22	chr1:214493000-214534600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr1:214493400-214508600	Strong transcription	HepG2	liver
24	chr1:214493800-214519000	Weak transcription	Fetal Thymus	thymus
25	chr1:214495400-214507400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr1:214495600-214510400	Weak transcription	NH-A	brain
27	chr1:214497800-214509000	Strong transcription	Dnd41	blood
28	chr1:214500000-214508800	Strong transcription	Fetal Intestine Small	intestine
29	chr1:214500200-214507200	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr1:214500200-214510000	Weak transcription	GM12878-XiMat	blood
31	chr1:214501800-214512000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr1:214501800-214517800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr1:214502000-214506800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr1:214502200-214506400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr1:214502200-214506600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr1:214502600-214510800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr1:214502600-214515000	Weak transcription	Brain Angular Gyrus	brain
38	chr1:214502800-214506400	Weak transcription	HSMM	muscle
39	chr1:214502800-214506600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:214502800-214506600	Weak transcription	Osteobl	bone
41	chr1:214502800-214510400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr1:214503000-214506400	Strong transcription	Fetal Muscle Trunk	muscle
43	chr1:214503000-214506600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr1:214503000-214506600	Weak transcription	HSMMtube	muscle
45	chr1:214503200-214506600	Weak transcription	NHLF	lung
46	chr1:214503200-214507400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr1:214503200-214510600	Weak transcription	NHDF-Ad	bronchial
48	chr1:214503200-214510800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr1:214503200-214537800	Weak transcription	Gastric	stomach
50	chr1:214503400-214507400	Weak transcription	Lung	lung

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