Variant report

Variant	rs412774
Chromosome Location	chr4:85301006-85301007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17008722	1.00[EUR][1000 genomes]
rs59419448	1.00[EUR][1000 genomes]
rs72961904	1.00[EUR][1000 genomes]
rs72961941	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85299400-85301600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:85299600-85301200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:85299600-85301200	Bivalent Enhancer	Brain Germinal Matrix	brain
4	chr4:85299800-85301200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr4:85300400-85301800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:85300600-85301800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr4:85300800-85301400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:85300800-85302000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
9	chr4:85301000-85301200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
10	chr4:85301000-85301200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
11	chr4:85301000-85301200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr4:85301000-85301200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
13	chr4:85301000-85301400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:85301000-85301400	Enhancers	A549	lung
15	chr4:85301000-85301600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:85301000-85301600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:85301000-85301600	Enhancers	Osteobl	bone
18	chr4:85301000-85301800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
19	chr4:85301000-85301800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:85301000-85301800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:85301000-85301800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr4:85301000-85301800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:85301000-85301800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:85301000-85301800	Enhancers	NHDF-Ad	bronchial
25	chr4:85301000-85302000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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