Variant report

Variant	rs59419448
Chromosome Location	chr4:85245527-85245528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11945408	1.00[AMR][1000 genomes]
rs11945983	1.00[AMR][1000 genomes]
rs17008722	1.00[EUR][1000 genomes]
rs412774	1.00[EUR][1000 genomes]
rs72953409	1.00[AMR][1000 genomes]
rs72955273	1.00[AMR][1000 genomes]
rs72960102	0.95[AFR][1000 genomes]
rs72961904	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72961941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831429	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1001364	chr4:85193054-85252321	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv998617	chr4:85193054-85255409	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85239600-85246600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:85244800-85247200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr4:85244800-85247600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:85245000-85245600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:85245000-85246800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:85245000-85247000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:85245000-85247000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:85245200-85246000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr4:85245200-85246000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr4:85245200-85247200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr4:85245200-85247200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:85245400-85245800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:85245400-85246400	Enhancers	Brain Hippocampus Middle	brain
14	chr4:85245400-85246400	Enhancers	Fetal Stomach	stomach
15	chr4:85245400-85246600	Enhancers	Brain Substantia Nigra	brain
16	chr4:85245400-85246800	Enhancers	Brain Germinal Matrix	brain
17	chr4:85245400-85247000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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