Variant report
| Variant | rs72955273 |
|---|---|
| Chromosome Location | chr4:85363711-85363712 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10001112 | 1.00[EUR][1000 genomes] |
| rs10012964 | 1.00[EUR][1000 genomes] |
| rs11930802 | 1.00[EUR][1000 genomes] |
| rs11934590 | 1.00[EUR][1000 genomes] |
| rs11945408 | 1.00[AMR][1000 genomes] |
| rs1444955 | 1.00[EUR][1000 genomes] |
| rs1495144 | 1.00[EUR][1000 genomes] |
| rs17008641 | 1.00[EUR][1000 genomes] |
| rs1994956 | 1.00[EUR][1000 genomes] |
| rs2083665 | 1.00[EUR][1000 genomes] |
| rs2119793 | 1.00[EUR][1000 genomes] |
| rs28431455 | 1.00[EUR][1000 genomes] |
| rs28523312 | 1.00[EUR][1000 genomes] |
| rs437295 | 1.00[EUR][1000 genomes] |
| rs438500 | 1.00[EUR][1000 genomes] |
| rs57866246 | 1.00[EUR][1000 genomes] |
| rs59419448 | 1.00[AMR][1000 genomes] |
| rs6825565 | 1.00[EUR][1000 genomes] |
| rs6826424 | 1.00[EUR][1000 genomes] |
| rs6828383 | 1.00[EUR][1000 genomes] |
| rs6831720 | 1.00[EUR][1000 genomes] |
| rs72953409 | 1.00[AMR][1000 genomes] |
| rs72961904 | 1.00[AMR][1000 genomes] |
| rs72961941 | 1.00[AMR][1000 genomes] |
| rs7668554 | 1.00[EUR][1000 genomes] |
| rs7668852 | 1.00[EUR][1000 genomes] |
| rs7691569 | 1.00[EUR][1000 genomes] |
| rs9990978 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829997 | chr4:85244076-85409405 | Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv829998 | chr4:85299693-85473450 | Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:85360400-85363800 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
