Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr4:85207272-85207475	H1-hESC	embryonic stem cell:	n/a	n/a
2	TEAD4	chr4:85207131-85207603	H1-hESC	embryonic stem cell:	n/a	n/a
3	EP300	chr4:85207224-85207530	H1-hESC	embryonic stem cell:	n/a	n/a
4	TEAD4	chr4:85207152-85207604	H1-hESC	embryonic stem cell:	n/a	n/a
5	SP1	chr4:85207149-85207583	H1-hESC	embryonic stem cell:	n/a	n/a
6	SP1	chr4:85207191-85207603	H1-hESC	embryonic stem cell:	n/a	n/a
7	YY1	chr4:85207221-85207584	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000250546	TF binding region

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10001112	1.00[EUR][1000 genomes]
rs10012964	1.00[EUR][1000 genomes]
rs11930802	1.00[EUR][1000 genomes]
rs11934590	1.00[EUR][1000 genomes]
rs1444955	1.00[EUR][1000 genomes]
rs1495144	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17008641	1.00[EUR][1000 genomes]
rs1994956	1.00[EUR][1000 genomes]
rs2083665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2119793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28431455	1.00[EUR][1000 genomes]
rs28523312	1.00[EUR][1000 genomes]
rs28727985	0.85[AMR][1000 genomes]
rs437295	1.00[EUR][1000 genomes]
rs438500	1.00[EUR][1000 genomes]
rs57866246	1.00[EUR][1000 genomes]
rs6825565	1.00[EUR][1000 genomes]
rs6826424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6828383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6831720	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72955273	1.00[EUR][1000 genomes]
rs72955986	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72955991	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7668554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7668852	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7691569	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1001364	chr4:85193054-85252321	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv998617	chr4:85193054-85255409	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85206800-85207800	Enhancers	H1 Cell Line	embryonic stem cell
2	chr4:85206800-85207800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:85207000-85207400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:85207000-85207400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:85207000-85207400	Enhancers	Gastric	stomach
6	chr4:85207000-85207800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:85207000-85207800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:85207000-85207800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:85207000-85207800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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