Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:85191697..85192557-chr4:85372441..85373864,5	MCF-7	breast:
2	chr11:33992659..33993278-chr4:85372646..85373266,2	MCF-7	breast:
3	chr4:85159698..85160208-chr4:85372408..85372912,2	MCF-7	breast:
4	chr2:161960371..161961244-chr4:85372393..85372998,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10001112	1.00[EUR][1000 genomes]
rs10012964	1.00[EUR][1000 genomes]
rs11930802	1.00[EUR][1000 genomes]
rs11934590	1.00[EUR][1000 genomes]
rs1495144	1.00[EUR][1000 genomes]
rs17008641	1.00[EUR][1000 genomes]
rs1994956	1.00[EUR][1000 genomes]
rs2083665	1.00[EUR][1000 genomes]
rs2119793	1.00[EUR][1000 genomes]
rs28431455	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523312	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28622322	1.00[AMR][1000 genomes]
rs28681653	1.00[AMR][1000 genomes]
rs437295	1.00[EUR][1000 genomes]
rs438500	1.00[EUR][1000 genomes]
rs57866246	1.00[EUR][1000 genomes]
rs6825565	1.00[EUR][1000 genomes]
rs6826424	1.00[EUR][1000 genomes]
rs6828383	1.00[EUR][1000 genomes]
rs6831720	1.00[EUR][1000 genomes]
rs72955273	1.00[EUR][1000 genomes]
rs7668554	1.00[EUR][1000 genomes]
rs7668852	1.00[EUR][1000 genomes]
rs7691569	1.00[EUR][1000 genomes]
rs9990978	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85370200-85373200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:85372400-85373200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:85372400-85373200	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search: