Variant report

Variant	rs6828383
Chromosome Location	chr4:85240424-85240425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10001112	1.00[EUR][1000 genomes]
rs10005772	0.89[AFR][1000 genomes]
rs10012964	1.00[EUR][1000 genomes]
rs11930802	1.00[EUR][1000 genomes]
rs11934590	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11947636	0.89[AFR][1000 genomes]
rs1444955	1.00[EUR][1000 genomes]
rs1495144	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17008641	1.00[EUR][1000 genomes]
rs1994956	1.00[EUR][1000 genomes]
rs2083665	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2119793	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28431455	1.00[EUR][1000 genomes]
rs28523312	1.00[EUR][1000 genomes]
rs28558705	0.89[AFR][1000 genomes]
rs28656956	0.86[AFR][1000 genomes]
rs28727985	0.85[AMR][1000 genomes]
rs28894761	0.95[AFR][1000 genomes]
rs437295	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs438500	1.00[EUR][1000 genomes]
rs57866246	1.00[EUR][1000 genomes]
rs60097326	0.85[AFR][1000 genomes]
rs6825565	1.00[EUR][1000 genomes]
rs6826424	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6831720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6843960	0.89[AFR][1000 genomes]
rs72955273	1.00[EUR][1000 genomes]
rs72955986	1.00[AMR][1000 genomes]
rs72955991	1.00[AMR][1000 genomes]
rs7668554	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7668852	1.00[CEU][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7688976	0.91[AFR][1000 genomes]
rs7691569	1.00[EUR][1000 genomes]
rs9990978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9993950	0.83[AFR][1000 genomes]
rs9999113	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1001364	chr4:85193054-85252321	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv998617	chr4:85193054-85255409	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85239600-85246600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:85240400-85240800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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