Variant report
| Variant | rs9993950 |
|---|---|
| Chromosome Location | chr4:85207943-85207944 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NKX6-1-2 | chr4:85207822-85207980 | ENSG00000250546 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10005772 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11947636 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2083665 | 0.81[AFR][1000 genomes] |
| rs2119793 | 0.95[AFR][1000 genomes] |
| rs28558705 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28894761 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60097326 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6826424 | 0.95[AFR][1000 genomes] |
| rs6828383 | 0.83[AFR][1000 genomes] |
| rs6843960 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7688976 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9999113 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv524354 | chr4:85006975-85215142 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv879514 | chr4:85057124-85272572 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv1001364 | chr4:85193054-85252321 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv998617 | chr4:85193054-85255409 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
