Variant report

Variant	rs28558705
Chromosome Location	chr4:85281183-85281184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10005772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11947636	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2083665	0.90[AFR][1000 genomes]
rs2119793	0.82[AFR][1000 genomes]
rs28656956	0.97[AFR][1000 genomes]
rs28727985	0.83[AFR][1000 genomes]
rs28894761	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60097326	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6826424	0.82[AFR][1000 genomes]
rs6828383	0.89[AFR][1000 genomes]
rs6843960	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7668554	0.96[AFR][1000 genomes]
rs7688976	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9993950	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9999113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85272800-85284600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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