Variant report

Variant	rs28894761
Chromosome Location	chr4:85243080-85243081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10005772	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11947636	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2083665	0.89[AFR][1000 genomes]
rs2119793	0.88[AFR][1000 genomes]
rs28558705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28656956	0.91[AFR][1000 genomes]
rs60097326	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6826424	0.88[AFR][1000 genomes]
rs6828383	0.95[AFR][1000 genomes]
rs6843960	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7668554	0.90[AFR][1000 genomes]
rs7688976	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9993950	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9999113	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1001364	chr4:85193054-85252321	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv998617	chr4:85193054-85255409	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85239600-85246600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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