Variant report

Variant	rs28727985
Chromosome Location	chr4:85288027-85288028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10005772	0.83[AFR][1000 genomes]
rs1495144	0.85[AMR][1000 genomes]
rs2083665	0.85[AMR][1000 genomes]
rs2119793	0.85[AMR][1000 genomes]
rs28558705	0.83[AFR][1000 genomes]
rs28656956	0.81[AFR][1000 genomes]
rs6826424	0.85[AMR][1000 genomes]
rs6828383	0.85[AMR][1000 genomes]
rs6831720	0.85[AMR][1000 genomes]
rs72955986	0.85[AMR][1000 genomes]
rs72955991	0.85[AMR][1000 genomes]
rs7668554	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7668852	0.85[AMR][1000 genomes]
rs7688976	0.81[AFR][1000 genomes]
rs9990978	0.85[AMR][1000 genomes]
rs9999113	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85286400-85289400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:85286800-85288800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:85287000-85288400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:85287000-85288400	Enhancers	Fetal Brain Male	brain
5	chr4:85287400-85289200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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