Variant report
| Variant | rs72955986 |
|---|---|
| Chromosome Location | chr4:85214391-85214392 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NKX6-1-2 | chr4:85214373-85214565 | ENSG00000250546 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10021127 | 1.00[EUR][1000 genomes] |
| rs11932874 | 0.94[ASN][1000 genomes] |
| rs1495144 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17008673 | 1.00[EUR][1000 genomes] |
| rs17008681 | 1.00[EUR][1000 genomes] |
| rs1967139 | 0.94[ASN][1000 genomes] |
| rs2083665 | 1.00[AMR][1000 genomes] |
| rs2119793 | 1.00[AMR][1000 genomes] |
| rs28372645 | 1.00[EUR][1000 genomes] |
| rs28375928 | 0.94[ASN][1000 genomes] |
| rs28451675 | 1.00[EUR][1000 genomes] |
| rs28532917 | 1.00[EUR][1000 genomes] |
| rs28718327 | 1.00[EUR][1000 genomes] |
| rs28727985 | 0.85[AMR][1000 genomes] |
| rs6535533 | 0.82[ASN][1000 genomes] |
| rs6816368 | 1.00[EUR][1000 genomes] |
| rs6825060 | 0.94[ASN][1000 genomes] |
| rs6826424 | 1.00[AMR][1000 genomes] |
| rs6828383 | 1.00[AMR][1000 genomes] |
| rs6831720 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6858150 | 0.94[ASN][1000 genomes] |
| rs72955991 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72961932 | 1.00[EUR][1000 genomes] |
| rs72962002 | 1.00[EUR][1000 genomes] |
| rs7654197 | 0.82[ASN][1000 genomes] |
| rs7660492 | 0.82[ASN][1000 genomes] |
| rs7668554 | 1.00[AMR][1000 genomes] |
| rs7668852 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7695256 | 0.94[ASN][1000 genomes] |
| rs7699309 | 1.00[EUR][1000 genomes] |
| rs9990978 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv524354 | chr4:85006975-85215142 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv879514 | chr4:85057124-85272572 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv1001364 | chr4:85193054-85252321 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv998617 | chr4:85193054-85255409 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:85213400-85214600 | Enhancers | Fetal Intestine Large | intestine |
| 2 | chr4:85214000-85214800 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 3 | chr4:85214200-85215400 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
