Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10001112	1.00[AMR][1000 genomes]
rs10012964	1.00[AMR][1000 genomes]
rs10021127	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008673	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008689	0.94[ASN][1000 genomes]
rs17008692	0.94[ASN][1000 genomes]
rs28372645	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28451675	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28532917	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28718327	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535533	0.82[ASN][1000 genomes]
rs6816368	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857631	0.94[ASN][1000 genomes]
rs72955986	1.00[EUR][1000 genomes]
rs72955991	1.00[EUR][1000 genomes]
rs72961914	0.94[ASN][1000 genomes]
rs72961932	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961933	1.00[ASN][1000 genomes]
rs7654197	0.82[ASN][1000 genomes]
rs7660492	0.82[ASN][1000 genomes]
rs7699309	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85272800-85284600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:85283200-85285200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:85283400-85285000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:85283600-85284200	Bivalent Enhancer	Brain Germinal Matrix	brain
5	chr4:85283600-85284400	Enhancers	Fetal Brain Male	brain
6	chr4:85283600-85284600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:85283600-85284800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:85283600-85284800	Bivalent Enhancer	Fetal Brain Female	brain
9	chr4:85283800-85284200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:85283800-85284400	Enhancers	Fetal Muscle Leg	muscle

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