Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85247684..85250579-chr4:85261859..85263659,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10021127	0.94[ASN][1000 genomes]
rs11932874	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11945202	0.86[AMR][1000 genomes]
rs13141237	0.85[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs17008523	0.85[CEU][hapmap]
rs17008673	0.94[ASN][1000 genomes]
rs17008681	0.94[ASN][1000 genomes]
rs17008689	0.88[ASN][1000 genomes]
rs17008692	0.88[ASN][1000 genomes]
rs17008878	0.82[ASN][1000 genomes]
rs1967139	0.91[EUR][1000 genomes]
rs28372645	0.94[ASN][1000 genomes]
rs28375928	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28451675	0.94[ASN][1000 genomes]
rs28532917	0.94[ASN][1000 genomes]
rs28718327	0.94[ASN][1000 genomes]
rs36076855	0.85[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6535533	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6816368	0.94[ASN][1000 genomes]
rs6825060	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6858150	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72961914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961932	0.94[ASN][1000 genomes]
rs72961933	0.94[ASN][1000 genomes]
rs72962002	0.94[ASN][1000 genomes]
rs7654197	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7660492	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7695256	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7699309	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85259800-85263200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:85259800-85263400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:85260200-85263000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:85261800-85263000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr4:85261800-85263400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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