Variant report

Variant	rs72961933
Chromosome Location	chr4:85276388-85276389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10021127	1.00[ASN][1000 genomes]
rs1155057	0.90[EUR][1000 genomes]
rs11727935	0.82[EUR][1000 genomes]
rs17008223	1.00[EUR][1000 genomes]
rs17008673	1.00[ASN][1000 genomes]
rs17008681	1.00[ASN][1000 genomes]
rs17008689	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17008692	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28372645	1.00[ASN][1000 genomes]
rs28451675	1.00[ASN][1000 genomes]
rs28532917	1.00[ASN][1000 genomes]
rs28718327	1.00[ASN][1000 genomes]
rs60920285	0.90[EUR][1000 genomes]
rs6535533	0.82[ASN][1000 genomes]
rs6816368	1.00[ASN][1000 genomes]
rs6855119	0.90[EUR][1000 genomes]
rs6857631	0.94[ASN][1000 genomes]
rs72955967	0.81[AFR][1000 genomes]
rs72955970	0.81[AFR][1000 genomes]
rs72961911	0.93[AFR][1000 genomes]
rs72961914	0.94[ASN][1000 genomes]
rs72961932	1.00[ASN][1000 genomes]
rs72962002	1.00[ASN][1000 genomes]
rs73831427	0.90[EUR][1000 genomes]
rs7654197	0.82[ASN][1000 genomes]
rs7660492	0.82[ASN][1000 genomes]
rs7699309	1.00[ASN][1000 genomes]
rs9992688	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85272800-85284600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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