Variant report

Variant	rs60920285
Chromosome Location	chr4:85145346-85145347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1155057	1.00[EUR][1000 genomes]
rs17008223	0.90[EUR][1000 genomes]
rs17008689	0.90[EUR][1000 genomes]
rs17008692	0.90[EUR][1000 genomes]
rs6855119	1.00[EUR][1000 genomes]
rs72961933	0.90[EUR][1000 genomes]
rs73831427	1.00[EUR][1000 genomes]
rs9992688	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1012379	chr4:85071268-85205732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85141800-85145600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:85142200-85146400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:85144400-85146400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:85144600-85146800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:85144800-85145600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr4:85144800-85145600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:85144800-85146800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:85144800-85147000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:85145000-85145400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr4:85145000-85146600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:85145000-85146800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:85145200-85145800	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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